5TCU Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5TCU_001 | 1/A/13:23 | No text annotation | homologous HL_4LFB_001 HL_73535.1 | |
| HL_5TCU_003 | 1/A/267:275 | GNRA related | homologous HL_4LFB_006 HL_87268.1 | |
| HL_5TCU_101 | 1/A/304:309 | GNRA | homologous HL_5J7L_007 NA | |
| HL_5TCU_120 | 1/A/330:340 | No text annotation | ||
| HL_5TCU_008 | 1/A/427:432 | No text annotation | geometric HL_4V88_198 NA | |
| HL_5TCU_009 | 1/A/530:535 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_5TCU_010 | 1/A/625:631 | GNRA-like with tWH | homologous HL_5J7L_014 NA | |
| HL_5TCU_011 | 1/A/697:706 | No text annotation | homologous HL_4LFB_015 HL_38491.2 | |
| HL_5TCU_012 | 1/A/734:739 | GNRA | homologous HL_4LFB_016 HL_34789.2 | |
| HL_5TCU_013 | 1/A/794:804 | No text annotation | homologous HL_4LFB_017 HL_38491.2 | |
| HL_5TCU_015 | 1/A/872:877 | GNRA | homologous HL_4LFB_019 HL_34789.2 | |
| HL_5TCU_016 | 1/A/906:913 | GNRA with extra cWW | geometric HL_7A0S_056 HL_87268.1 | |
| HL_5TCU_017 | 1/A/973:982 | No text annotation | homologous HL_5J7L_021 NA | |
| HL_5TCU_103 | 1/A/1036:1047 | No text annotation | ||
| HL_5TCU_019 | 1/A/1039:1044 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_5TCU_020 | 1/A/1088:1093 | GNRA | homologous HL_5J7L_023 NA | |
| HL_5TCU_021 | 1/A/1101:1108 | T-loop related | homologous HL_4LFB_025 HL_63894.2 | |
| HL_5TCU_022 | 1/A/1141:1154 | No text annotation | ||
| HL_5TCU_023 | 1/A/1175:1183 | No text annotation | geometric HL_8KAH_003 NA | |
| HL_5TCU_024 | 1/A/1276:1281 | GNRA | homologous HL_4LFB_028 HL_34789.2 | |
| HL_5TCU_025 | 1/A/1324:1335 | No text annotation | ||
| HL_5TCU_026 | 1/A/1367:1377 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_5TCU_027 | 1/A/1460:1466 | No text annotation | geometric HL_2ZZM_002 HL_33487.1 | |
| HL_5TCU_028 | 1/A/1527:1532 | GNRA | homologous HL_4LFB_032 HL_34789.2 | |
| HL_5TCU_029 | 1/B/67:74 | No text annotation | homologous HL_4WF9_001 HL_08550.2 | |
| HL_5TCU_121 | 1/B/87:95 | No text annotation | homologous HL_9DFE_002 HL_00911.2 | |
| HL_5TCU_031 | 1/B/122:127 | No text annotation | homologous HL_4WF9_003 HL_75660.7 | |
| HL_5TCU_032 | 1/B/136:143 | GNRA wlth tandem sheared | homologous HL_4WF9_004 HL_98423.2 | |
| HL_5TCU_033 | 1/B/159:169 | No text annotation | homologous HL_5J7L_138 NA | |
| HL_5TCU_106 | 1/B/188:214 | No text annotation | ||
| HL_5TCU_034 | 1/B/190:212 | No text annotation | ||
| HL_5TCU_035 | 1/B/228:233 | No text annotation | homologous HL_4WF9_007 HL_51020.2 | |
| HL_5TCU_036 | 1/B/249:255 | No text annotation | homologous HL_5J7L_141 NA | |
| HL_5TCU_038 | 1/B/348:355 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_010 HL_13999.2 | |
| HL_5TCU_039 | 1/B/362:366 | No text annotation | homologous HL_7A0S_011 HL_75660.7 | |
| HL_5TCU_040 | 1/B/370:378 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_5TCU_041 | 1/B/424:442 | No text annotation | ||
| HL_5TCU_042 | 1/B/456:463 | Pseudoknot geometry | homologous HL_4WF9_014 HL_30680.5 | |
| HL_5TCU_043 | 1/B/508:513 | GNRA | homologous HL_7A0S_015 HL_34789.2 | |
| HL_5TCU_044 | 1/B/533:538 | GNRA | homologous HL_7RQB_016 NA | |
| HL_5TCU_107 | 1/B/581:600 | No text annotation | ||
| HL_5TCU_045 | 1/B/587:594 | No text annotation | homologous HL_4WF9_017 HL_50318.1 | |
| HL_5TCU_046 | 1/B/609:618 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_018 HL_33597.2 | |
| HL_5TCU_047 | 1/B/654:662 | Other HL | homologous HL_4WF9_019 HL_63894.2 | |
| HL_5TCU_108 | 1/B/686:692 | GNRA | homologous HL_4WF9_021 HL_34789.2 | |
| HL_5TCU_049 | 1/B/757:764 | No text annotation | geometric HL_361D_002 NA | |
| HL_5TCU_050 | 1/B/789:798 | No text annotation | homologous HL_7A0S_022 HL_50204.1 | |
| HL_5TCU_051 | 1/B/824:830 | No text annotation | homologous HL_4WF9_024 HL_92935.1 | |
| HL_5TCU_052 | 1/B/870:877 | No text annotation | geometric HL_7KI3_001 HL_75660.7 | |
| HL_5TCU_053 | 1/B/997:1008 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_5TCU_054 | 1/B/1022:1029 | No text annotation | homologous HL_4WF9_028 HL_47171.1 | |
| HL_5TCU_056 | 1/B/1211:1221 | No text annotation | ||
| HL_5TCU_057 | 1/B/1260:1265 | GNRA | homologous HL_7A0S_031 HL_34789.2 | |
| HL_5TCU_058 | 1/B/1318:1326 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_032 HL_33597.2 | |
| HL_5TCU_112 | 1/B/1360:1368 | No text annotation | geometric HL_8C3A_054 NA | |
| HL_5TCU_059 | 1/B/1361:1367 | Pseudoknot geometry with 3' bulge | homologous HL_4WF9_033 HL_49081.1 | |
| HL_5TCU_060 | 1/B/1400:1405 | GNRA variation | homologous HL_7A0S_034 HL_34789.2 | |
| HL_5TCU_061 | 1/B/1426:1435 | No text annotation | homologous HL_4WF9_035 HL_77449.1 | |
| HL_5TCU_063 | 1/B/1612:1615 | Mini UNCG | homologous HL_7A0S_039 HL_90436.2 | |
| HL_5TCU_064 | 1/B/1656:1663 | No text annotation | homologous HL_4WF9_038 HL_28592.1 | |
| HL_5TCU_065 | 1/B/1672:1682 | No text annotation | ||
| HL_5TCU_066 | 1/B/1735:1740 | UNCG | homologous HL_7A0S_042 HL_61337.2 | |
| HL_5TCU_067 | 1/B/1761:1769 | No text annotation | ||
| HL_5TCU_068 | 1/B/1779:1783 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_5TCU_069 | 1/B/1804:1814 | No text annotation | homologous HL_4WF9_043 HL_87681.1 | |
| HL_5TCU_070 | 1/B/1833:1838 | No text annotation | homologous HL_4WF9_044 NA | |
| HL_5TCU_072 | 1/B/1937:1947 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_5TCU_115 | 1/B/1975:1985 | tRNA D-loop | geometric HL_4V9K_033 HL_20490.1 | |
| HL_5TCU_073 | 1/B/1976:1984 | No text annotation | homologous HL_4WF9_046 HL_61418.2 | |
| HL_5TCU_122 | 1/B/2054:2063 | No text annotation | homologous HL_4WF9_047 HL_78372.1 | |
| HL_5TCU_117 | 1/B/2234:2244 | No text annotation | ||
| HL_5TCU_076 | 1/B/2236:2242 | No text annotation | homologous HL_4WF9_048 HL_42293.1 | |
| HL_5TCU_077 | 1/B/2275:2283 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_5TCU_078 | 1/B/2291:2303 | No text annotation | homologous HL_5J7L_187 NA | |
| HL_5TCU_080 | 1/B/2351:2358 | Pseudoknot geometry | homologous HL_5J7L_189 NA | |
| HL_5TCU_081 | 1/B/2382:2389 | GNRA with extra cWW | homologous HL_4WF9_053 HL_87268.1 | |
| HL_5TCU_082 | 1/B/2401:2406 | GNRA | homologous HL_4WF9_054 HL_34789.2 | |
| HL_5TCU_083 | 1/B/2431:2440 | No text annotation | homologous HL_4WF9_055 HL_51853.2 | |
| HL_5TCU_084 | 1/B/2498:2506 | No text annotation | homologous HL_5J7L_193 NA | |
| HL_5TCU_085 | 1/B/2555:2562 | GNRA variation | homologous HL_5J7L_194 NA | |
| HL_5TCU_086 | 1/B/2578:2584 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_5TCU_087 | 1/B/2621:2626 | GNRA | homologous HL_7A0S_062 HL_34789.2 | |
| HL_5TCU_123 | 1/B/2679:2695 | No text annotation | ||
| HL_5TCU_088 | 1/B/2685:2690 | No text annotation | geometric HL_7A0S_011 HL_75660.7 | |
| HL_5TCU_089 | 1/B/2728:2733 | Ribsomal LSU H95 | homologous HL_7A0S_064 HL_12125.2 | |
| HL_5TCU_090 | 1/B/2770:2788 | No text annotation | ||
| HL_5TCU_091 | 1/B/2817:2826 | No text annotation | ||
| HL_5TCU_092 | 1/B/2839:2847 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_5TCU_093 | 1/B/2876:2881 | GNRA | homologous HL_7RQB_069 NA | |
| HL_5TCU_094 | 1/C/36:42 | No text annotation | homologous HL_5J7L_203 NA | |
| HL_5TCU_098 | 1/E/13:22 | No text annotation | homologous HL_5E81_205 NA | |
| HL_5TCU_099 | 1/E/31:39 | tRNA anticodon loop | homologous HL_6UFM_002 HL_81376.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5TCU_002 | No text annotation | ||
| HL_5TCU_004 | GNRA with extra cWW | ||
| HL_5TCU_005 | No text annotation | ||
| HL_5TCU_006 | No text annotation | ||
| HL_5TCU_007 | GNRA | ||
| HL_5TCU_102 | No text annotation | ||
| HL_5TCU_014 | No text annotation | ||
| HL_5TCU_018 | GNRA | ||
| HL_5TCU_104 | No text annotation | ||
| HL_5TCU_105 | No text annotation | ||
| HL_5TCU_030 | No text annotation | ||
| HL_5TCU_037 | No text annotation | ||
| HL_5TCU_048 | Anticodon loop related | ||
| HL_5TCU_109 | No text annotation | ||
| HL_5TCU_110 | No text annotation | ||
| HL_5TCU_055 | No text annotation | ||
| HL_5TCU_111 | No text annotation | ||
| HL_5TCU_113 | No text annotation | ||
| HL_5TCU_062 | No text annotation | ||
| HL_5TCU_114 | No text annotation | ||
| HL_5TCU_071 | No text annotation | ||
| HL_5TCU_116 | No text annotation | ||
| HL_5TCU_074 | No text annotation | ||
| HL_5TCU_075 | No text annotation | ||
| HL_5TCU_079 | No text annotation | ||
| HL_5TCU_118 | No text annotation | ||
| HL_5TCU_119 | No text annotation | ||
| HL_5TCU_095 | No text annotation | ||
| HL_5TCU_096 | tRNA anticodon loop | ||
| HL_5TCU_097 | T-loop with 2 stacked bulged bases | ||
| HL_5TCU_100 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5TCU_001 | 1/A/31:34, 1/A/560:561 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_5TCU_164 | 1/A/31:36, 1/A/557:561 | Partly complementary | geometric IL_7VYX_008 IL_71154.2 | |
| IL_5TCU_002 | 1/A/34:35, 1/A/558:560 | Single stack bend | geometric IL_7KGA_003 IL_15011.2 | |
| IL_5TCU_208 | 1/A/45:46, 1/A/404:406 | Single bulged A | geometric IL_5J7L_002 NA | |
| IL_5TCU_003 | 1/A/48:53, 1/A/367:369 | Decoding loop related | geometric IL_2O3X_003 IL_53541.1 | |
| IL_5TCU_209 | 1/A/64:67, 1/A/102:103 | No text annotation | ||
| IL_5TCU_007 | 1/A/132:136, 1/A/235:238 | No text annotation | homologous IL_4LFB_008 IL_60988.2 | |
| IL_5TCU_010 | 1/A/250:255, 1/A/285:292 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.4 | |
| IL_5TCU_011 | 1/A/257:261, 1/A/281:283 | No text annotation | homologous IL_6CZR_124 NA | |
| IL_5TCU_210 | 1/A/300:301, 1/A/312:316 | C-loop | homologous IL_5J7L_016 NA | |
| IL_5TCU_211 | 1/A/327:329, 1/A/341:342 | Single stack bend | geometric IL_5J7L_249 NA | |
| IL_5TCU_166 | 1/A/347:349, 1/A/356:359 | No text annotation | geometric IL_4WSM_372 IL_16315.2 | |
| IL_5TCU_013 | 1/A/375:377, 1/A/400:401 | Single bulged U | geometric IL_2OIU_003 IL_97561.2 | |
| IL_5TCU_014 | 1/A/378:383, 1/A/397:399 | No text annotation | ||
| IL_5TCU_015 | 1/A/383:387, 1/A/392:397 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_5TCU_017 | 1/A/512:519, 1/A/548:549 | SSU/LSU pseudoknot | homologous IL_5J7L_024 NA | |
| IL_5TCU_018 | 1/A/523:529, 1/A/536:544 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_5TCU_019 | 1/A/586:593, 1/A/764:771 | No text annotation | ||
| IL_5TCU_212 | 1/A/602:604, 1/A/652:653 | Major groove platform | homologous IL_5J7L_028 NA | |
| IL_5TCU_021 | 1/A/605:606, 1/A/648:651 | Major groove minor groove platform; mini C-loop | homologous IL_6CZR_137 NA | |
| IL_5TCU_022 | 1/A/611:614, 1/A/642:643 | No text annotation | ||
| IL_5TCU_023 | 1/A/614:621, 1/A/636:642 | No text annotation | ||
| IL_5TCU_024 | 1/A/621:622, 1/A/634:636 | Single stack bend | geometric IL_4V9F_081 IL_15011.2 | |
| IL_5TCU_025 | 1/A/662:663, 1/A/759:762 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_74641.2 | |
| IL_5TCU_026 | 1/A/665:666, 1/A/755:757 | Major groove platform | homologous IL_4LFB_028 IL_48076.8 | |
| IL_5TCU_213 | 1/A/670:674, 1/A/748:751 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
| IL_5TCU_170 | 1/A/681:685, 1/A/721:725 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_71154.2 | |
| IL_5TCU_171 | 1/A/691:696, 1/A/707:715 | No text annotation | homologous IL_6CZR_143 NA | |
| IL_5TCU_030 | 1/A/782:787, 1/A/811:813 | Other IL | geometric IL_4V88_435 NA | |
| IL_5TCU_031 | 1/A/787:791, 1/A/807:811 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_05821.1 | |
| IL_5TCU_172 | 1/A/787:792, 1/A/806:811 | tSH-tHW-tHS-cWW | geometric IL_3LQX_002 IL_35186.2 | |
| IL_5TCU_214 | 1/A/897:904, 1/A/915:920 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 NA | |
| IL_5TCU_033 | 1/A/931:935, 1/A/1402:1407 | No text annotation | ||
| IL_5TCU_034 | 1/A/935:937, 1/A/1401:1402 | Single bulged G | geometric IL_5J7L_040 NA | |
| IL_5TCU_035 | 1/A/943:945, 1/A/1391:1395 | Minor groove platform | homologous IL_5J7L_041 NA | |
| IL_5TCU_036 | 1/A/963:964, 1/A/1237:1239 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_5TCU_037 | 1/A/1003:1008, 1/A/1055:1057 | No text annotation | ||
| IL_5TCU_038 | 1/A/1008:1011, 1/A/1051:1055 | No text annotation | ||
| IL_5TCU_039 | 1/A/1060:1062, 1/A/1219:1220 | Single bulged U | homologous IL_5J7L_046 NA | |
| IL_5TCU_040 | 1/A/1063:1068, 1/A/1215:1218 | No text annotation | ||
| IL_5TCU_174 | 1/A/1063:1070, 1/A/1210:1218 | No text annotation | ||
| IL_5TCU_041 | 1/A/1069:1070, 1/A/1210:1214 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_5TCU_042 | 1/A/1072:1073, 1/A/1206:1208 | Single bulged A | homologous IL_5J7L_049 NA | |
| IL_5TCU_043 | 1/A/1073:1075, 1/A/1204:1206 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_68118.2 | |
| IL_5TCU_044 | 1/A/1130:1134, 1/A/1163:1166 | No text annotation | geometric IL_8C3A_102 NA | |
| IL_5TCU_045 | 1/A/1134:1141, 1/A/1154:1163 | No text annotation | ||
| IL_5TCU_046 | 1/A/1255:1257, 1/A/1303:1304 | Single stack bend | geometric IL_4LFB_041 IL_15011.2 | |
| IL_5TCU_175 | 1/A/1257:1264, 1/A/1295:1303 | No text annotation | ||
| IL_5TCU_048 | 1/A/1270:1276, 1/A/1281:1287 | No text annotation | ||
| IL_5TCU_049 | 1/A/1314:1320, 1/A/1339:1345 | No text annotation | ||
| IL_5TCU_050 | 1/A/1410:1412, 1/A/1513:1516 | No text annotation | geometric IL_4V88_463 NA | |
| IL_5TCU_051 | 1/A/1412:1415, 1/A/1509:1513 | No text annotation | geometric IL_4V88_464 NA | |
| IL_5TCU_052 | 1/A/1416:1418, 1/A/1506:1508 | Isolated non-canonical cWW pair | geometric IL_4ZC7_004 IL_01003.2 | |
| IL_5TCU_053 | 1/A/1418:1420, 1/A/1503:1506 | Decoding loop related | geometric IL_3C3Z_002 IL_53541.1 | |
| IL_5TCU_054 | 1/A/1423:1425, 1/A/1498:1500 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_5TCU_055 | 1/A/1427:1430, 1/A/1493:1496 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_5TCU_056 | 1/A/1435:1438, 1/A/1485:1488 | Tandem non-canonical cWW pairs | geometric IL_5TBW_100 NA | |
| IL_5TCU_057 | 1/A/1440:1442, 1/A/1482:1483 | Single stack bend | geometric IL_7A0S_054 IL_15011.2 | |
| IL_5TCU_058 | 1/A/1442:1446, 1/A/1478:1482 | UAA/GAN with extra stack | geometric IL_7RQB_074 NA | |
| IL_5TCU_059 | 1/A/1446:1448, 1/A/1476:1478 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_01003.2 | |
| IL_5TCU_062 | 1/B/22:24, 1/B/562:563 | Single stack bend | geometric IL_4WF9_007 IL_15011.2 | |
| IL_5TCU_063 | 1/B/24:30, 1/B/555:562 | Triple sheared with non-canonical cWW | homologous IL_7A0S_001 IL_22311.1 | |
| IL_5TCU_180 | 1/B/36:37, 1/B/488:490 | Single bulged A | homologous IL_5J7L_246 NA | |
| IL_5TCU_065 | 1/B/42:44, 1/B/480:483 | Minor groove platform with extra cWW | homologous IL_4WF9_003 IL_82096.1 | |
| IL_5TCU_181 | 1/B/55:76, 1/B/109:114 | No text annotation | ||
| IL_5TCU_066 | 1/B/80:85, 1/B/97:105 | Kink-turn | geometric IL_4LFB_031 IL_95727.1 | |
| IL_5TCU_067 | 1/B/152:153, 1/B/175:177 | Major groove platform | geometric IL_7RQB_092 NA | |
| IL_5TCU_069 | 1/B/186:187, 1/B/215:217 | Single stack bend | homologous IL_7A0S_005 IL_15011.2 | |
| IL_5TCU_070 | 1/B/241:248, 1/B/256:262 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_4WF9_009 IL_62167.2 | |
| IL_5TCU_071 | 1/B/305:306, 1/B/409:412 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_5TCU_182 | 1/B/317:332, 1/B/394:403 | No text annotation | ||
| IL_5TCU_073 | 1/B/336:338, 1/B/386:390 | No text annotation | homologous IL_4WF9_014 IL_76658.1 | |
| IL_5TCU_074 | 1/B/527:530, 1/B/541:554 | No text annotation | homologous IL_4WF9_015 IL_44923.1 | |
| IL_5TCU_075 | 1/B/581:584, 1/B/597:600 | Double sheared | homologous IL_4WF9_016 IL_58355.2 | |
| IL_5TCU_076 | 1/B/584:586, 1/B/596:597 | Single stack bend | geometric IL_4LFB_041 IL_15011.2 | |
| IL_5TCU_077 | 1/B/586:587, 1/B/594:596 | Single stack bend | geometric IL_7KGA_003 IL_15011.2 | |
| IL_5TCU_078 | 1/B/607:609, 1/B/618:620 | Isolated non-canonical cWW pair | geometric IL_3SZX_001 IL_01003.2 | |
| IL_5TCU_183 | 1/B/638:640, 1/B/705:707 | Isolated non-canonical cWW pair | homologous IL_4WF9_018 IL_71625.2 | |
| IL_5TCU_080 | 1/B/649:653, 1/B/663:667 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.3 | |
| IL_5TCU_081 | 1/B/717:719, 1/B/851:853 | No text annotation | homologous IL_7RQB_017 NA | |
| IL_5TCU_082 | 1/B/719:723, 1/B/844:851 | tHW-tHW cross-strand stack | geometric IL_4WF9_021 IL_73855.1 | |
| IL_5TCU_083 | 1/B/741:743, 1/B/808:811 | Isolated non-canonical cWW pair | geometric IL_5Y7M_007 IL_01003.2 | |
| IL_5TCU_084 | 1/B/746:748, 1/B/773:776 | Isolated non-canonical cWW pair | geometric IL_4V88_467 NA | |
| IL_5TCU_085 | 1/B/748:752, 1/B/769:773 | Triple sheared | geometric IL_4WF9_024 IL_15190.2 | |
| IL_5TCU_086 | 1/B/783:785, 1/B/802:803 | Major groove platform | homologous IL_4WF9_026 IL_48076.8 | |
| IL_5TCU_087 | 1/B/785:787, 1/B/801:802 | Single stack bend | geometric IL_7A0S_054 IL_15011.2 | |
| IL_5TCU_088 | 1/B/787:788, 1/B/799:801 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_5TCU_089 | 1/B/882:883, 1/B/984:986 | Single stack bend | homologous IL_7A0S_022 IL_15011.2 | |
| IL_5TCU_184 | 1/B/882:885, 1/B/982:986 | No text annotation | geometric IL_4DB2_001 IL_61988.1 | |
| IL_5TCU_090 | 1/B/889:896, 1/B/972:978 | No text annotation | ||
| IL_5TCU_091 | 1/B/897:898, 1/B/969:971 | Single bulged U | homologous IL_4WF9_030 IL_97561.2 | |
| IL_5TCU_185 | 1/B/898:907, 1/B/960:969 | No text annotation | ||
| IL_5TCU_092 | 1/B/907:908, 1/B/958:960 | Minor groove platform | homologous IL_4WF9_032 IL_34520.2 | |
| IL_5TCU_093 | 1/B/909:913, 1/B/954:957 | C-loop | homologous IL_7A0S_029 IL_16301.1 | |
| IL_5TCU_094 | 1/B/919:924, 1/B/943:948 | No text annotation | ||
| IL_5TCU_095 | 1/B/1036:1038, 1/B/1204:1207 | No text annotation | ||
| IL_5TCU_096 | 1/B/1038:1040, 1/B/1203:1204 | Single bulged C | homologous IL_5J7L_276 NA | |
| IL_5TCU_097 | 1/B/1042:1046, 1/B/1197:1201 | UAA/GAN | homologous IL_7A0S_033 IL_08938.1 | |
| IL_5TCU_186 | 1/B/1042:1055, 1/B/1194:1201 | No text annotation | ||
| IL_5TCU_098 | 1/B/1048:1055, 1/B/1194:1195 | SSU/LSU pseudoknot | geometric IL_7A0S_034 IL_11411.1 | |
| IL_5TCU_099 | 1/B/1055:1057, 1/B/1193:1194 | Single bulged U | homologous IL_5J7L_279 NA | |
| IL_5TCU_100 | 1/B/1062:1068, 1/B/1184:1188 | Kink-turn related | geometric IL_4WF9_039 IL_57188.6 | |
| IL_5TCU_101 | 1/B/1068:1074, 1/B/1168:1184 | No text annotation | geometric IL_4WF9_040 IL_50715.4 | |
| IL_5TCU_102 | 1/B/1075:1078, 1/B/1165:1167 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_5TCU_103 | 1/B/1080:1083, 1/B/1160:1163 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 NA | |
| IL_5TCU_215 | 1/B/1087:1096, 1/B/1151:1156 | No text annotation | ||
| IL_5TCU_105 | 1/B/1243:1245, 1/B/1277:1279 | Isolated cWH basepair | homologous IL_4WF9_045 IL_10892.2 | |
| IL_5TCU_106 | 1/B/1246:1253, 1/B/1272:1276 | Kink-turn | homologous IL_7A0S_043 IL_90775.2 | |
| IL_5TCU_107 | 1/B/1257:1259, 1/B/1266:1268 | Intercalated cWW | homologous IL_4WF9_047 IL_53541.1 | |
| IL_5TCU_108 | 1/B/1300:1307, 1/B/2038:2044 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_4WF9_048 IL_62167.2 | |
| IL_5TCU_189 | 1/B/1335:1340, 1/B/1669:1686 | No text annotation | ||
| IL_5TCU_109 | 1/B/1356:1360, 1/B/1368:1370 | Major groove minor groove platform with tHH | homologous IL_4WF9_050 IL_06671.1 | |
| IL_5TCU_110 | 1/B/1388:1390, 1/B/1416:1417 | Single stack bend with SAM intercalation | geometric IL_6FZ0_001 IL_75501.1 | |
| IL_5TCU_111 | 1/B/1447:1452, 1/B/1631:1636 | No text annotation | ||
| IL_5TCU_113 | 1/B/1461:1465, 1/B/1624:1627 | Other IL | geometric IL_4WF9_054 IL_74317.1 | |
| IL_5TCU_114 | 1/B/1466:1468, 1/B/1622:1623 | Single stack bend | geometric IL_4LFB_041 IL_15011.2 | |
| IL_5TCU_191 | 1/B/1518:1522, 1/B/1558:1562 | Double sheared with near cWW | homologous IL_7A0S_056 IL_87767.2 | |
| IL_5TCU_116 | 1/B/1695:1700, 1/B/2031:2033 | No text annotation | homologous IL_4WF9_062 IL_12566.5 | |
| IL_5TCU_216 | 1/B/1707:1709, 1/B/2022:2024 | Isolated tWW turn | homologous IL_5J7L_305 NA | |
| IL_5TCU_118 | 1/B/1710:1718, 1/B/2017:2021 | No text annotation | geometric IL_4WF9_117 IL_80252.1 | |
| IL_5TCU_119 | 1/B/1730:1735, 1/B/1740:1746 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_5TCU_120 | 1/B/1755:1760, 1/B/1770:1774 | No text annotation | ||
| IL_5TCU_121 | 1/B/1796:1798, 1/B/2007:2010 | No text annotation | geometric IL_4V8Q_188 NA | |
| IL_5TCU_122 | 1/B/1825:1831, 1/B/1840:1848 | Kink-turn related | homologous IL_4WF9_069 IL_17069.6 | |
| IL_5TCU_123 | 1/B/1864:1867, 1/B/1929:1930 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_5TCU_217 | 1/B/1868:1871, 1/B/1923:1928 | Tandem non-canonical cWW pairs | geometric IL_1GID_008 NA | |
| IL_5TCU_125 | 1/B/1873:1876, 1/B/1920:1921 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 NA | |
| IL_5TCU_126 | 1/B/1878:1882, 1/B/1914:1918 | UAA/GAN with extra stack | homologous IL_4WF9_073 IL_89021.3 | |
| IL_5TCU_127 | 1/B/1883:1887, 1/B/1909:1913 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_5TCU_128 | 1/B/1891:1894, 1/B/1901:1905 | UAA/GAN variation | homologous IL_4WF9_075 IL_77691.7 | |
| IL_5TCU_129 | 1/B/1960:1961, 1/B/1991:1994 | Bulged stacked bases | geometric IL_4WF9_076 IL_24886.2 | |
| IL_5TCU_130 | 1/B/1961:1972, 1/B/1988:1991 | No text annotation | homologous IL_4WF9_077 IL_84014.1 | |
| IL_5TCU_218 | 1/B/2077:2079, 1/B/2644:2645 | Major groove platform | homologous IL_4WF9_078 IL_48076.8 | |
| IL_5TCU_132 | 1/B/2081:2083, 1/B/2639:2642 | No text annotation | homologous IL_5J7L_321 NA | |
| IL_5TCU_133 | 1/B/2094:2100, 1/B/2463:2470 | No text annotation | ||
| IL_5TCU_219 | 1/B/2094:2101, 1/B/2462:2470 | No text annotation | ||
| IL_5TCU_134 | 1/B/2108:2110, 1/B/2263:2266 | Isolated tHS basepair with bulges | homologous IL_4WF9_082 IL_87316.1 | |
| IL_5TCU_220 | 1/B/2111:2113, 1/B/2260:2262 | Isolated non-canonical cWW pair | homologous IL_4WF9_083 IL_01003.2 | |
| IL_5TCU_136 | 1/B/2123:2125, 1/B/2218:2220 | Isolated non-canonical cWW pair | geometric IL_4P3T_006 NA | |
| IL_5TCU_138 | 1/B/2229:2231, 1/B/2247:2248 | Single bulged U | homologous IL_5J7L_331 NA | |
| IL_5TCU_139 | 1/B/2324:2326, 1/B/2344:2348 | Isolated tHS basepair with bulges | homologous IL_4WF9_086 IL_14250.1 | |
| IL_5TCU_140 | 1/B/2377:2380, 1/B/2391:2394 | Double sheared | homologous IL_5J7L_333 NA | |
| IL_5TCU_141 | 1/B/2428:2430, 1/B/2441:2442 | Single bulged U | homologous IL_4WF9_088 IL_97561.2 | |
| IL_5TCU_142 | 1/B/2480:2481, 1/B/2525:2527 | Single stack bend | geometric IL_4WF9_089 IL_15011.2 | |
| IL_5TCU_143 | 1/B/2481:2482, 1/B/2523:2525 | Major groove platform | homologous IL_4WF9_090 IL_48076.8 | |
| IL_5TCU_221 | 1/B/2484:2486, 1/B/2520:2521 | Major groove platform | homologous IL_4WF9_091 IL_48076.8 | |
| IL_5TCU_145 | 1/B/2486:2488, 1/B/2516:2520 | Major groove minor groove platform with extra cWW | homologous IL_7RQB_094 NA | |
| IL_5TCU_146 | 1/B/2493:2497, 1/B/2507:2511 | Double sheared with non-canonical cWW | homologous IL_4WF9_093 IL_87767.2 | |
| IL_5TCU_222 | 1/B/2534:2535, 1/B/2607:2609 | Major groove platform | homologous IL_4WF9_094 IL_46637.2 | |
| IL_5TCU_148 | 1/B/2537:2540, 1/B/2598:2605 | No text annotation | ||
| IL_5TCU_149 | 1/B/2549:2550, 1/B/2567:2570 | Major groove platform with intercalation | geometric IL_4WF9_097 IL_94991.2 | |
| IL_5TCU_150 | 1/B/2618:2619, 1/B/2628:2630 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_5TCU_151 | 1/B/2663:2667, 1/B/2801:2809 | tSH-tHS-tHW | homologous IL_4WF9_099 IL_04638.4 | |
| IL_5TCU_152 | 1/B/2679:2685, 1/B/2690:2695 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7RQB_103 NA | |
| IL_5TCU_153 | 1/B/2707:2711, 1/B/2752:2754 | C-loop | homologous IL_7RQB_104 NA | |
| IL_5TCU_223 | 1/B/2713:2718, 1/B/2745:2750 | No text annotation | ||
| IL_5TCU_154 | 1/B/2714:2718, 1/B/2745:2749 | UAA/GAN related, with intercalation | homologous IL_4WF9_102 IL_82016.1 | |
| IL_5TCU_224 | 1/B/2722:2723, 1/B/2738:2741 | Multiple bulged bases | homologous IL_4WF9_103 IL_44609.2 | |
| IL_5TCU_156 | 1/B/2764:2769, 1/B/2789:2794 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_5TCU_157 | 1/B/2858:2859, 1/B/2898:2900 | Major groove intercalation | homologous IL_4WF9_106 IL_77710.1 | |
| IL_5TCU_158 | 1/B/2863:2865, 1/B/2891:2894 | No text annotation | homologous IL_4WF9_107 IL_05502.1 | |
| IL_5TCU_159 | 1/B/2867:2872, 1/B/2885:2889 | tHS double platform | homologous IL_4WF9_108 IL_48489.1 | |
| IL_5TCU_160 | 1/C/2:5, 1/C/110:113 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_15225.2 | |
| IL_5TCU_161 | 1/C/5:8, 1/C/107:110 | Tandem non-canonical cWW pairs | geometric IL_4WF9_110 IL_65740.1 | |
| IL_5TCU_205 | 1/C/5:16, 1/C/63:110 | No text annotation | ||
| IL_5TCU_162 | 1/C/8:16, 1/C/63:107 | No text annotation | ||
| IL_5TCU_206 | 1/C/20:27, 1/C/54:59 | No text annotation | ||
| IL_5TCU_207 | 1/C/27:30, 1/C/48:54 | No text annotation | ||
| IL_5TCU_163 | 1/C/32:36, 1/C/42:46 | Symmetric double minor groove platform | geometric IL_5NS3_002 IL_58103.12 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5TCU_004 | No text annotation | ||
| IL_5TCU_005 | No text annotation | ||
| IL_5TCU_006 | Multiple bulged bases | ||
| IL_5TCU_008 | No text annotation | ||
| IL_5TCU_165 | No text annotation | ||
| IL_5TCU_009 | Isolated non-canonical cWW pair | ||
| IL_5TCU_012 | No text annotation | ||
| IL_5TCU_016 | No text annotation | ||
| IL_5TCU_167 | No text annotation | ||
| IL_5TCU_020 | No text annotation | ||
| IL_5TCU_168 | No text annotation | ||
| IL_5TCU_169 | No text annotation | ||
| IL_5TCU_027 | No text annotation | ||
| IL_5TCU_028 | No text annotation | ||
| IL_5TCU_029 | No text annotation | ||
| IL_5TCU_032 | 9x7 Sarcin-Ricin with inserted C; G-bulge | ||
| IL_5TCU_173 | 10x8 Sarcin-Ricin; G-bulge | ||
| IL_5TCU_047 | No text annotation | ||
| IL_5TCU_176 | No text annotation | ||
| IL_5TCU_177 | Tandem non-canonical cWW pairs | ||
| IL_5TCU_178 | Partly complementary | ||
| IL_5TCU_060 | No text annotation | ||
| IL_5TCU_061 | No text annotation | ||
| IL_5TCU_179 | No text annotation | ||
| IL_5TCU_064 | Isolated cWH basepair | ||
| IL_5TCU_068 | Isolated non-canonical cWW pair | ||
| IL_5TCU_072 | No text annotation | ||
| IL_5TCU_079 | Tandem non-canonical cWW pairs | ||
| IL_5TCU_104 | No text annotation | ||
| IL_5TCU_187 | No text annotation | ||
| IL_5TCU_188 | No text annotation | ||
| IL_5TCU_190 | No text annotation | ||
| IL_5TCU_112 | No text annotation | ||
| IL_5TCU_115 | Double sheared; A in syn; two near cWW pairs | ||
| IL_5TCU_117 | No text annotation | ||
| IL_5TCU_192 | No text annotation | ||
| IL_5TCU_193 | No text annotation | ||
| IL_5TCU_124 | No text annotation | ||
| IL_5TCU_194 | No text annotation | ||
| IL_5TCU_195 | No text annotation | ||
| IL_5TCU_196 | No text annotation | ||
| IL_5TCU_131 | No text annotation | ||
| IL_5TCU_197 | No text annotation | ||
| IL_5TCU_135 | Tandem non-canonical cWW pairs | ||
| IL_5TCU_137 | Isolated non-canonical cWW pair | ||
| IL_5TCU_198 | Double sheared with near cWW | ||
| IL_5TCU_199 | Isolated non-canonical cWW pair | ||
| IL_5TCU_144 | Major groove platform with extra pair | ||
| IL_5TCU_147 | Isolated non-canonical cWW with bulges | ||
| IL_5TCU_200 | No text annotation | ||
| IL_5TCU_201 | No text annotation | ||
| IL_5TCU_202 | No text annotation | ||
| IL_5TCU_155 | Tandem non-canonical cWW pairs | ||
| IL_5TCU_203 | No text annotation | ||
| IL_5TCU_204 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5TCU_041 | 1/A/47:48, 1/A/369:375, 1/A/401:403 | No text annotation | homologous J3_4LFB_010 J3_58657.1 | |
| J3_5TCU_002 | 1/A/594:596, 1/A/659:662, 1/A/762:763 | No text annotation | geometric J3_4LFB_011 J3_01633.1 | |
| J3_5TCU_042 | 1/A/594:596, 1/A/659:663, 1/A/759:763 | No text annotation | homologous J3_5J7L_051 NA | |
| J3_5TCU_003 | 1/A/680:681, 1/A/725:733, 1/A/740:742 | No text annotation | homologous J3_5J7L_003 NA | |
| J3_5TCU_004 | 1/A/834:837, 1/A/867:871, 1/A/878:884 | No text annotation | homologous J3_5J7L_004 NA | |
| J3_5TCU_043 | 1/A/946:949, 1/A/1355:1363, 1/A/1381:1390 | No text annotation | ||
| J3_5TCU_027 | 1/A/963:972, 1/A/983:994, 1/A/1232:1239 | No text annotation | ||
| J3_5TCU_005 | 1/A/965:972, 1/A/983:994, 1/A/1232:1236 | No text annotation | geometric J3_4LFB_004 J3_88451.1 | |
| J3_5TCU_006 | 1/A/1000:1003, 1/A/1057:1059, 1/A/1221:1226 | No text annotation | homologous J3_4LFB_005 J3_84394.1 | |
| J3_5TCU_028 | 1/A/1000:1008, 1/A/1055:1059, 1/A/1221:1226 | No text annotation | ||
| J3_5TCU_007 | 1/A/1012:1018, 1/A/1031:1036, 1/A/1047:1050 | No text annotation | ||
| J3_5TCU_008 | 1/A/1075:1080, 1/A/1119:1125, 1/A/1198:1204 | No text annotation | homologous J3_6CZR_023 NA | |
| J3_5TCU_044 | 1/A/1085:1086, 1/A/1095:1099, 1/A/1110:1114 | No text annotation | homologous J3_5J7L_009 NA | |
| J3_5TCU_045 | 1/A/1128:1141, 1/A/1154:1174, 1/A/1184:1195 | No text annotation | ||
| J3_5TCU_030 | 1/B/22:31, 1/B/520:530, 1/B/541:563 | No text annotation | ||
| J3_5TCU_010 | 1/B/30:31, 1/B/520:527, 1/B/554:555 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_5TCU_031 | 1/B/32:35, 1/B/491:507, 1/B/514:519 | No text annotation | homologous J3_4WF9_012 J3_07616.1 | |
| J3_5TCU_011 | 1/B/55:67, 1/B/74:76, 1/B/109:114 | No text annotation | ||
| J3_5TCU_012 | 1/B/272:276, 1/B/295:302, 1/B/415:416 | No text annotation | homologous J3_7RQB_003 NA | |
| J3_5TCU_046 | 1/B/272:278, 1/B/293:302, 1/B/415:416 | No text annotation | ||
| J3_5TCU_047 | 1/B/340:344, 1/B/359:368, 1/B/380:384 | No text annotation | homologous J3_4WF9_015 J3_77124.1 | |
| J3_5TCU_048 | 1/B/644:648, 1/B/668:684, 1/B/694:701 | No text annotation | ||
| J3_5TCU_049 | 1/B/728:734, 1/B/818:822, 1/B/832:839 | No text annotation | ||
| J3_5TCU_050 | 1/B/739:752, 1/B/769:781, 1/B/805:813 | No text annotation | ||
| J3_5TCU_014 | 1/B/743:745, 1/B/777:782, 1/B/804:808 | No text annotation | ||
| J3_5TCU_015 | 1/B/1335:1340, 1/B/1669:1671, 1/B/1683:1686 | No text annotation | homologous J3_4WF9_004 J3_32852.7 | |
| J3_5TCU_016 | 1/B/1343:1346, 1/B/1649:1655, 1/B/1664:1666 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_5TCU_017 | 1/B/1347:1351, 1/B/1375:1382, 1/B/1645:1648 | No text annotation | ||
| J3_5TCU_051 | 1/B/1468:1473, 1/B/1611:1612, 1/B/1615:1622 | No text annotation | homologous J3_4WF9_017 J3_34864.3 | |
| J3_5TCU_018 | 1/B/2118:2120, 1/B/2223:2228, 1/B/2249:2255 | No text annotation | homologous J3_4WF9_007 J3_07703.1 | |
| J3_5TCU_052 | 1/B/2322:2324, 1/B/2348:2350, 1/B/2359:2364 | No text annotation | homologous J3_4WF9_008 J3_05327.1 | |
| J3_5TCU_020 | 1/B/2544:2547, 1/B/2572:2574, 1/B/2588:2594 | No text annotation | homologous J3_4WF9_009 J3_32601.6 | |
| J3_5TCU_021 | 1/B/2816:2817, 1/B/2826:2831, 1/B/2909:2913 | No text annotation | homologous J3_4WF9_020 J3_24127.1 | |
| J3_5TCU_022 | 1/B/2834:2835, 1/B/2851:2856, 1/B/2902:2906 | No text annotation | homologous J3_4WF9_021 J3_76911.2 | |
| J4_5TCU_012 | 1/A/114:122, 1/A/246:248, 1/A/294:297, 1/A/319:320 | No text annotation | ||
| J4_5TCU_013 | 1/A/952:959, 1/A/1243:1252, 1/A/1307:1314, 1/A/1345:1352 | No text annotation | ||
| J4_5TCU_014 | 1/B/271:272, 1/B/416:421, 1/B/445:452, 1/B/467:470 | No text annotation | homologous J4_4WF9_001 J4_94698.1 | |
| J4_5TCU_015 | 1/B/1308:1313, 1/B/1331:1332, 1/B/1689:1692, 1/B/2036:2037 | No text annotation | homologous J4_4WF9_004 J4_64571.6 | |
| J4_5TCU_005 | 1/B/1385:1398, 1/B/1407:1423, 1/B/1438:1442, 1/B/1641:1642 | No text annotation | ||
| J4_5TCU_016 | 1/B/1799:1803, 1/B/1815:1820, 1/B/1853:1858, 1/B/2001:2006 | No text annotation | ||
| J4_5TCU_007 | 1/B/1858:1863, 1/B/1931:1933, 1/B/1951:1960, 1/B/1994:2001 | No text annotation | ||
| J4_5TCU_008 | 1/B/2312:2318, 1/B/2368:2374, 1/B/2397:2399, 1/B/2408:2410 | No text annotation | ||
| J4_5TCU_009 | 1/B/2670:2673, 1/B/2701:2703, 1/B/2758:2762, 1/B/2796:2798 | No text annotation | homologous J4_4WF9_009 J4_77044.5 | |
| J5_5TCU_001 | 1/A/55:63, 1/A/104:112, 1/A/322:324, 1/A/345:347, 1/A/359:365 | No text annotation | ||
| J5_5TCU_008 | 1/B/47:54, 1/B/115:120, 1/B/129:130, 1/B/149:151, 1/B/178:180 | No text annotation | homologous J5_4WF9_001 J5_27223.1 | |
| J5_5TCU_009 | 1/B/271:278, 1/B/293:302, 1/B/415:421, 1/B/445:452, 1/B/467:470 | No text annotation | ||
| J5_5TCU_003 | 1/B/271:278, 1/B/293:303, 1/B/414:422, 1/B/444:453, 1/B/466:470 | No text annotation | ||
| J5_5TCU_010 | 1/B/576:578, 1/B/603:609, 1/B/618:622, 1/B/1299:1300, 1/B/2044:2045 | No text annotation | ||
| J5_5TCU_005 | 1/B/627:632, 1/B/713:716, 1/B/854:857, 1/B/1234:1239, 1/B/1283:1294 | No text annotation | ||
| J5_5TCU_011 | 1/B/1718:1726, 1/B/1750:1751, 1/B/1778:1779, 1/B/1783:1791, 1/B/2015:2017 | No text annotation | homologous J5_4WF9_005 J5_99177.1 | |
| J5_5TCU_007 | 1/B/2084:2091, 1/B/2473:2480, 1/B/2527:2534, 1/B/2609:2615, 1/B/2633:2638 | No text annotation | ||
| J6_5TCU_001 | 1/B/45:47, 1/B/180:186, 1/B/217:228, 1/B/233:238, 1/B/265:269, 1/B/472:479 | No text annotation | ||
| J6_5TCU_004 | 1/B/2094:2104, 1/B/2270:2273, 1/B/2285:2288, 1/B/2306:2312, 1/B/2410:2422, 1/B/2448:2470 | No text annotation | ||
| J6_5TCU_005 | 1/B/2101:2104, 1/B/2270:2273, 1/B/2285:2288, 1/B/2306:2312, 1/B/2410:2422, 1/B/2448:2462 | No text annotation | ||
| J7_5TCU_003 | 1/B/8:15, 1/B/570:576, 1/B/2045:2050, 1/B/2067:2070, 1/B/2652:2657, 1/B/2815:2816, 1/B/2913:2914 | No text annotation | ||
| J7_5TCU_004 | 1/B/862:867, 1/B/880:881, 1/B/987:990, 1/B/1015:1020, 1/B/1031:1036, 1/B/1207:1209, 1/B/1223:1229 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5TCU_001 | No text annotation | ||
| J3_5TCU_023 | No text annotation | ||
| J3_5TCU_024 | No text annotation | ||
| J3_5TCU_025 | No text annotation | ||
| J3_5TCU_026 | No text annotation | ||
| J3_5TCU_009 | No text annotation | ||
| J3_5TCU_029 | No text annotation | ||
| J3_5TCU_032 | No text annotation | ||
| J3_5TCU_033 | No text annotation | ||
| J3_5TCU_034 | No text annotation | ||
| J3_5TCU_035 | No text annotation | ||
| J3_5TCU_013 | No text annotation | ||
| J3_5TCU_036 | No text annotation | ||
| J3_5TCU_037 | No text annotation | ||
| J3_5TCU_038 | No text annotation | ||
| J3_5TCU_039 | No text annotation | ||
| J3_5TCU_019 | No text annotation | ||
| J3_5TCU_040 | No text annotation | ||
| J4_5TCU_001 | No text annotation | ||
| J4_5TCU_002 | No text annotation | ||
| J4_5TCU_003 | No text annotation | ||
| J4_5TCU_004 | No text annotation | ||
| J4_5TCU_006 | No text annotation | ||
| J4_5TCU_010 | tRNA junction | ||
| J4_5TCU_011 | tRNA junction | ||
| J5_5TCU_002 | No text annotation | ||
| J5_5TCU_004 | No text annotation | ||
| J5_5TCU_006 | No text annotation | ||
| J6_5TCU_002 | No text annotation | ||
| J6_5TCU_003 | No text annotation | ||
| J7_5TCU_001 | No text annotation | ||
| J7_5TCU_002 | No text annotation |
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