HL_5TCU_015

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_015 not in the Motif Atlas

Homologous match to HL_4LFB_019

Geometric discrepancy: 0.2259

The information below is about HL_4LFB_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

5TCU|1|A|C|872
5TCU|1|A|U|873
5TCU|1|A|A|874
5TCU|1|A|A|875
5TCU|1|A|C|876
5TCU|1|A|G|877

Current chains

Chain A

16S RRNA

Nearby chains

Chain SD

30S ribosomal protein S5

Chain SF

30S ribosomal protein S8