HL_5TCU_018

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGAGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_018 not in the Motif Atlas

Homologous match to HL_4LFB_022

Geometric discrepancy: 0.2764

The information below is about HL_4LFB_022

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

5TCU|1|A|A|1022
5TCU|1|A|G|1023
5TCU|1|A|A|1024
5TCU|1|A|G|1025
5TCU|1|A|A|1026
5TCU|1|A|U|1027

Current chains

Chain A

16S RRNA

Nearby chains

Chain S5

30S ribosomal protein S14 type Z

Chain SI

30S ribosomal protein S19