3D structure

PDB id
5TCU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Methicillin sensitive Staphylococcus aureus 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GAUCAGCAUGC
Length
11 nucleotides
Bulged bases
5TCU|1|A|U|1375
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5TCU_026 not in the Motif Atlas
Homologous match to HL_4LFB_030
Geometric discrepancy: 0.2797
The information below is about HL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_86432.1
Basepair signature
cWW-tWH-tWH-F-F-F
Number of instances in this motif group
5

Unit IDs

5TCU|1|A|G|1367
5TCU|1|A|A|1368
5TCU|1|A|U|1369
5TCU|1|A|C|1370
5TCU|1|A|A|1371
5TCU|1|A|G|1372
5TCU|1|A|C|1373
5TCU|1|A|A|1374
5TCU|1|A|U|1375
5TCU|1|A|G|1376
5TCU|1|A|C|1377

Current chains

Chain A
16S RRNA

Nearby chains

Chain S1
30S ribosomal protein S10
Chain S5
30S ribosomal protein S14 type Z
Chain SH
30S ribosomal protein S9

Coloring options:


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