HL_5TCU_032

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGUUAUGU

Length

8 nucleotides

Bulged bases

5TCU|1|B|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_032 not in the Motif Atlas

Homologous match to HL_4WF9_004

Geometric discrepancy: 0.2678

The information below is about HL_4WF9_004

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

12

Unit IDs

5TCU|1|B|A|136
5TCU|1|B|G|137
5TCU|1|B|U|138
5TCU|1|B|U|139
5TCU|1|B|A|140
5TCU|1|B|U|141
5TCU|1|B|G|142
5TCU|1|B|U|143

Current chains

Chain B

23S RRNA

Nearby chains

Chain L6

50S ribosomal protein L23