HL_5TCU_045

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGUUAAUG

Length

8 nucleotides

Bulged bases

5TCU|1|B|U|590, 5TCU|1|B|U|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_045 not in the Motif Atlas

Homologous match to HL_4WF9_017

Geometric discrepancy: 0.2731

The information below is about HL_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50318.1

Basepair signature

cWW-cSH-F-F

Number of instances in this motif group

1

Unit IDs

5TCU|1|B|C|587
5TCU|1|B|G|588
5TCU|1|B|U|589
5TCU|1|B|U|590
5TCU|1|B|A|591
5TCU|1|B|A|592
5TCU|1|B|U|593
5TCU|1|B|G|594

Current chains

Chain B

23S RRNA

Nearby chains

Chain L3

50S ribosomal protein L20

Chain L4

50S ribosomal protein L21

Chain LM

50S ribosomal protein L13