HL_5TCU_053

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUGAUAAGGUC

Length

12 nucleotides

Bulged bases

5TCU|1|B|U|1002, 5TCU|1|B|G|1005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_053 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2233

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

5TCU|1|B|G|997
5TCU|1|B|G|998
5TCU|1|B|U|999
5TCU|1|B|G|1000
5TCU|1|B|A|1001
5TCU|1|B|U|1002
5TCU|1|B|A|1003
5TCU|1|B|A|1004
5TCU|1|B|G|1005
5TCU|1|B|G|1006
5TCU|1|B|U|1007
5TCU|1|B|C|1008

Current chains

Chain B

23S RRNA

Nearby chains

Chain C

5S ribosomal RNA; 5S rRNA

Chain LP

50S ribosomal protein L16