HL_5TCU_054

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAACAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_054 not in the Motif Atlas

Homologous match to HL_4WF9_028

Geometric discrepancy: 0.1732

The information below is about HL_4WF9_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5TCU|1|B|G|1022
5TCU|1|B|A|1023
5TCU|1|B|A|1024
5TCU|1|B|A|1025
5TCU|1|B|C|1026
5TCU|1|B|A|1027
5TCU|1|B|G|1028
5TCU|1|B|C|1029

Current chains

Chain B

23S RRNA

Nearby chains

Chain L3

50S ribosomal protein L20

Chain L4

50S ribosomal protein L21

Chain LD

50S ribosomal protein L30