HL_5TCU_058

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_058 not in the Motif Atlas

Homologous match to HL_4WF9_032

Geometric discrepancy: 0.174

The information below is about HL_4WF9_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.2

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

5TCU|1|B|G|1318
5TCU|1|B|U|1319
5TCU|1|B|G|1320
5TCU|1|B|A|1321
5TCU|1|B|G|1322
5TCU|1|B|A|1323
5TCU|1|B|A|1324
5TCU|1|B|U|1325
5TCU|1|B|C|1326

Current chains

Chain B

23S RRNA

Nearby chains

Chain L5

50S ribosomal protein L22

Chain LQ

50S ribosomal protein L17