HL_5TCU_060

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGACAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_060 not in the Motif Atlas

Homologous match to HL_7A0S_034

Geometric discrepancy: 0.202

The information below is about HL_7A0S_034

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

5TCU|1|B|C|1400
5TCU|1|B|G|1401
5TCU|1|B|A|1402
5TCU|1|B|C|1403
5TCU|1|B|A|1404
5TCU|1|B|G|1405

Current chains

Chain B

23S RRNA

Nearby chains

Chain LA

50S ribosomal protein L28

Chain LG

50S ribosomal protein L34