HL_5TCU_061

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

5TCU|1|B|U|1433, 5TCU|1|B|U|1434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_061 not in the Motif Atlas

Homologous match to HL_4WF9_035

Geometric discrepancy: 0.2873

The information below is about HL_4WF9_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5TCU|1|B|G|1426
5TCU|1|B|U|1427
5TCU|1|B|U|1428
5TCU|1|B|G|1429
5TCU|1|B|A|1430
5TCU|1|B|U|1431
5TCU|1|B|A|1432
5TCU|1|B|U|1433
5TCU|1|B|U|1434
5TCU|1|B|C|1435

Current chains

Chain B

23S RRNA

Nearby chains

Chain L6

50S ribosomal protein L23