HL_5TCU_077

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

5TCU|1|B|G|2277, 5TCU|1|B|G|2278

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_077 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.3242

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TCU|1|B|C|2275
5TCU|1|B|U|2276
5TCU|1|B|G|2277
5TCU|1|B|G|2278
5TCU|1|B|G|2279
5TCU|1|B|G|2280
5TCU|1|B|C|2281
5TCU|1|B|G|2282
5TCU|1|B|G|2283

Current chains

Chain B

23S RRNA

Nearby chains

Chain E

Transfer RNA; tRNA

Chain L9

50S ribosomal protein L27

Chain LP

50S ribosomal protein L16