HL_5TCU_083

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGCAUGGAAG

Length

10 nucleotides

Bulged bases

5TCU|1|B|C|2433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_083 not in the Motif Atlas

Homologous match to HL_4WF9_055

Geometric discrepancy: 0.1224

The information below is about HL_4WF9_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5TCU|1|B|C|2431
5TCU|1|B|G|2432
5TCU|1|B|C|2433
5TCU|1|B|A|2434
5TCU|1|B|U|2435
5TCU|1|B|G|2436
5TCU|1|B|G|2437
5TCU|1|B|A|2438
5TCU|1|B|A|2439
5TCU|1|B|G|2440

Current chains

Chain B

23S RRNA

Nearby chains

Chain LO

50S ribosomal protein L15