HL_5TCU_084

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGUUCACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_084 not in the Motif Atlas

Homologous match to HL_5J7L_193

Geometric discrepancy: 0.1801

The information below is about HL_5J7L_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5TCU|1|B|A|2498
5TCU|1|B|G|2499
5TCU|1|B|U|2500
5TCU|1|B|U|2501
5TCU|1|B|C|2502
5TCU|1|B|A|2503
5TCU|1|B|C|2504
5TCU|1|B|A|2505
5TCU|1|B|U|2506

Current chains

Chain B

23S RRNA

Nearby chains

Chain LI

50S ribosomal protein L36