HL_5TCU_087

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

5TCU|1|B|U|2623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_087 not in the Motif Atlas

Homologous match to HL_7A0S_062

Geometric discrepancy: 0.2613

The information below is about HL_7A0S_062

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

5TCU|1|B|C|2621
5TCU|1|B|G|2622
5TCU|1|B|U|2623
5TCU|1|B|G|2624
5TCU|1|B|A|2625
5TCU|1|B|G|2626

Current chains

Chain B

23S RRNA

Nearby chains

Chain E

Transfer RNA; tRNA

Chain L2

50S ribosomal protein L2