HL_5TCU_088

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_088 not in the Motif Atlas

Geometric match to HL_7A0S_011

Geometric discrepancy: 0.3382

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5TCU|1|B|C|2685
5TCU|1|B|G|2686
5TCU|1|B|A|2687
5TCU|1|B|G|2688
5TCU|1|B|A|2689
5TCU|1|B|G|2690

Current chains

Chain B

23S RRNA

Nearby chains

Chain LL

50S ribosomal protein L6