HL_5TCU_092

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AAAGAUGAU

Length

9 nucleotides

Bulged bases

5TCU|1|B|A|2840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_092 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.1844

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5TCU|1|B|A|2839
5TCU|1|B|A|2840
5TCU|1|B|A|2841
5TCU|1|B|G|2842
5TCU|1|B|A|2843
5TCU|1|B|U|2844
5TCU|1|B|G|2845
5TCU|1|B|A|2846
5TCU|1|B|U|2847

Current chains

Chain B

23S RRNA

Nearby chains

Chain LC

50S ribosomal protein L3

Chain LQ

50S ribosomal protein L17