HL_5TCU_107

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGAGCCCGUUAAUGGGUGAU

Length

20 nucleotides

Bulged bases

5TCU|1|B|U|590, 5TCU|1|B|A|592, 5TCU|1|B|U|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TCU|1|B|A|581
5TCU|1|B|G|582
5TCU|1|B|A|583
5TCU|1|B|G|584
5TCU|1|B|C|585
5TCU|1|B|C|586
5TCU|1|B|C|587
5TCU|1|B|G|588
5TCU|1|B|U|589
5TCU|1|B|U|590
5TCU|1|B|A|591
5TCU|1|B|A|592
5TCU|1|B|U|593
5TCU|1|B|G|594
5TCU|1|B|G|595
5TCU|1|B|G|596
5TCU|1|B|U|597
5TCU|1|B|G|598
5TCU|1|B|A|599
5TCU|1|B|U|600

Current chains

Chain B

23S RRNA

Nearby chains

Chain L3

50S ribosomal protein L20

Chain L4

50S ribosomal protein L21

Chain LM

50S ribosomal protein L13