HL_5TCU_115
3D structure
- PDB id
- 5TCU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Methicillin sensitive Staphylococcus aureus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGGUAAGUUCC
- Length
- 11 nucleotides
- Bulged bases
- 5TCU|1|B|G|1981, 5TCU|1|B|U|1982
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5TCU_115 not in the Motif Atlas
- Geometric match to HL_4V9K_033
- Geometric discrepancy: 0.2824
- The information below is about HL_4V9K_033
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
5TCU|1|B|G|1975
5TCU|1|B|G|1976
5TCU|1|B|G|1977
5TCU|1|B|U|1978
5TCU|1|B|A|1979
5TCU|1|B|A|1980
5TCU|1|B|G|1981
5TCU|1|B|U|1982
5TCU|1|B|U|1983
5TCU|1|B|C|1984
5TCU|1|B|C|1985
Current chains
- Chain B
- 23S RRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain LN
- 50S ribosomal protein L14
Coloring options: