3D structure

PDB id
5TCU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Methicillin sensitive Staphylococcus aureus 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GGGUAAGUUCC
Length
11 nucleotides
Bulged bases
5TCU|1|B|G|1981, 5TCU|1|B|U|1982
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5TCU_115 not in the Motif Atlas
Geometric match to HL_4V9K_033
Geometric discrepancy: 0.2824
The information below is about HL_4V9K_033
Detailed Annotation
tRNA D-loop
Broad Annotation
No text annotation
Motif group
HL_20490.1
Basepair signature
cWW-cWS-F
Number of instances in this motif group
13

Unit IDs

5TCU|1|B|G|1975
5TCU|1|B|G|1976
5TCU|1|B|G|1977
5TCU|1|B|U|1978
5TCU|1|B|A|1979
5TCU|1|B|A|1980
5TCU|1|B|G|1981
5TCU|1|B|U|1982
5TCU|1|B|U|1983
5TCU|1|B|C|1984
5TCU|1|B|C|1985

Current chains

Chain B
23S RRNA

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain LN
50S ribosomal protein L14

Coloring options:


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