HL_5TCU_118

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGUAGUCGG

Length

10 nucleotides

Bulged bases

5TCU|1|B|G|2556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_118 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2736

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

5TCU|1|B|C|2554
5TCU|1|B|U|2555
5TCU|1|B|G|2556
5TCU|1|B|U|2557
5TCU|1|B|A|2558
5TCU|1|B|G|2559
5TCU|1|B|U|2560
5TCU|1|B|C|2561
5TCU|1|B|G|2562
5TCU|1|B|G|2563

Current chains

Chain B

23S RRNA

Nearby chains

Chain LI

50S ribosomal protein L36

Chain LL

50S ribosomal protein L6