HL_5TCU_122

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

5TCU|1|B|A|2057, 5TCU|1|B|A|2058, 5TCU|1|B|G|2059

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_122 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.2022

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

5TCU|1|B|G|2054
5TCU|1|B|U|2055
5TCU|1|B|G|2056
5TCU|1|B|A|2057
5TCU|1|B|A|2058
5TCU|1|B|G|2059
5TCU|1|B|A|2060
5TCU|1|B|U|2061
5TCU|1|B|G|2062
5TCU|1|B|C|2063

Current chains

Chain B

23S RRNA

Nearby chains

Chain L4

50S ribosomal protein L21

Chain LC

50S ribosomal protein L3

Chain LE

50S ribosomal protein L32