HL_5TGA_051
3D structure
- PDB id
- 5TGA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AGGGAACGGGCU
- Length
- 12 nucleotides
- Bulged bases
- 5TGA|1|1|A|2372, 5TGA|1|1|A|2373, 5TGA|1|1|C|2374
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5TGA_051 not in the Motif Atlas
- Geometric match to HL_4V7M_040
- Geometric discrepancy: 0.3883
- The information below is about HL_4V7M_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50951.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5TGA|1|1|A|2368
5TGA|1|1|G|2369
5TGA|1|1|G|2370
5TGA|1|1|G|2371
5TGA|1|1|A|2372
5TGA|1|1|A|2373
5TGA|1|1|C|2374
5TGA|1|1|G|2375
5TGA|1|1|G|2376
5TGA|1|1|G|2377
5TGA|1|1|C|2378
5TGA|1|1|U|2379
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L3
- 60S ribosomal protein L3
- Chain M6
- 60S ribosomal protein L16-A
- Chain O2
- 60S ribosomal protein L32
- Chain O3
- 60S ribosomal protein L33-A
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