HL_5TGA_121
3D structure
- PDB id
- 5TGA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGAGAAUC
- Length
- 9 nucleotides
- Bulged bases
- 5TGA|1|5|G|218, 5TGA|1|5|A|219, 5TGA|1|5|G|220
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5TGA_121 not in the Motif Atlas
- Homologous match to HL_5TBW_007
- Geometric discrepancy: 0.0859
- The information below is about HL_5TBW_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
5TGA|1|5|G|216
5TGA|1|5|U|217
5TGA|1|5|G|218
5TGA|1|5|A|219
5TGA|1|5|G|220
5TGA|1|5|A|221
5TGA|1|5|A|222
5TGA|1|5|U|223
5TGA|1|5|C|224
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain l4
- 60S ribosomal protein L4-A
- Chain n6
- 60S ribosomal protein L26-A
- Chain o2
- 60S ribosomal protein L32
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