HL_5TGA_236

3D structure

PDB id

5TGA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCUUGUG

Length

7 nucleotides

Bulged bases

5TGA|1|6|U|718, 5TGA|1|6|U|719, 5TGA|1|6|G|720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TGA_236 not in the Motif Atlas

Geometric match to HL_4V88_202

Geometric discrepancy: 0.1245

The information below is about HL_4V88_202

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98928.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

5TGA|1|6|C|716
5TGA|1|6|C|717
5TGA|1|6|U|718
5TGA|1|6|U|719
5TGA|1|6|G|720
5TGA|1|6|U|721
5TGA|1|6|G|722

Current chains

Chain 6

18S ribosomal RNA

Nearby chains