HL_5TGM_093

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TGM_093 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.171

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5TGM|1|2|A|883
5TGM|1|2|G|884
5TGM|1|2|G|885
5TGM|1|2|U|886
5TGM|1|2|G|887
5TGM|1|2|A|888
5TGM|1|2|A|889
5TGM|1|2|A|890
5TGM|1|2|U|891
5TGM|1|2|U|892

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C4

40S ribosomal protein S14-A