HL_5TGM_095

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

5TGM|1|2|U|987

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TGM_095 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.1338

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5TGM|1|2|G|980
5TGM|1|2|A|981
5TGM|1|2|U|982
5TGM|1|2|C|983
5TGM|1|2|A|984
5TGM|1|2|G|985
5TGM|1|2|A|986
5TGM|1|2|U|987
5TGM|1|2|A|988
5TGM|1|2|C|989
5TGM|1|2|C|990

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain C4

40S ribosomal protein S14-A