HL_5TGM_168

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AAUUCAUUUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TGM_168 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.187

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5TGM|1|5|A|2535
5TGM|1|5|A|2536
5TGM|1|5|U|2537
5TGM|1|5|U|2538
5TGM|1|5|C|2539
5TGM|1|5|A|2540
5TGM|1|5|U|2541
5TGM|1|5|U|2542
5TGM|1|5|U|2543
5TGM|1|5|U|2544

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain s1

40S ribosomal protein S1-A