HL_5TGM_178

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

5TGM|1|5|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TGM_178 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.0992

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

5TGM|1|5|A|2897
5TGM|1|5|G|2898
5TGM|1|5|C|2899
5TGM|1|5|A|2900
5TGM|1|5|G|2901
5TGM|1|5|A|2902
5TGM|1|5|A|2903
5TGM|1|5|U|2904

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l9

60S ribosomal protein L9-A

Chain q0

Ubiquitin-60S ribosomal protein L40