HL_5TGM_239

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

5TGM|1|5|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TGM_239 not in the Motif Atlas

Homologous match to HL_8P9A_139

Geometric discrepancy: 0.1723

The information below is about HL_8P9A_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5TGM|1|5|C|1239
5TGM|1|5|A|1240
5TGM|1|5|U|1241
5TGM|1|5|G|1242
5TGM|1|5|G|1243
5TGM|1|5|A|1244
5TGM|1|5|A|1245
5TGM|1|5|G|1246
5TGM|1|5|U|1247
5TGM|1|5|C|1248
5TGM|1|5|G|1249

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m2

60S Ribosomal Protein L12