HL_5TZS_006

3D structure

PDB id

5TZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Architecture of the yeast small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GGGAUUC

Length

7 nucleotides

Bulged bases

5TZS|1|1|U|380

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TZS_006 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.1385

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5TZS|1|1|G|363
5TZS|1|1|G|364
5TZS|1|1|G|377
5TZS|1|1|A|378
5TZS|1|1|U|379
5TZS|1|1|U|380
5TZS|1|1|C|381

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain 5

rpS4_ES4

Chain 9

rpS9_uS4