5TZS Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5TZS_001 | No text annotation | ||
| HL_5TZS_002 | GNRA related | ||
| HL_5TZS_003 | T-loop with 1 bulged base | ||
| HL_5TZS_004 | Mini UNCG | ||
| HL_5TZS_005 | GNRA related | ||
| HL_5TZS_006 | No text annotation | ||
| HL_5TZS_007 | No text annotation | ||
| HL_5TZS_008 | UNCG | ||
| HL_5TZS_009 | No text annotation | ||
| HL_5TZS_010 | No text annotation | ||
| HL_5TZS_011 | No text annotation | ||
| HL_5TZS_012 | No text annotation | ||
| HL_5TZS_013 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5TZS_027 | 1/2/78:85, 1/2/325:329 | Kink-turn | geometric IL_3PLA_001 NA | |
| IL_5TZS_032 | 1/2/78:96, 1/2/320:329 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5TZS_001 | Minor groove platform | ||
| IL_5TZS_002 | No text annotation | ||
| IL_5TZS_003 | No text annotation | ||
| IL_5TZS_004 | Tandem non-canonical cWW pairs | ||
| IL_5TZS_005 | Multiple bulged bases | ||
| IL_5TZS_006 | No text annotation | ||
| IL_5TZS_007 | tWH-tWH-tHW-tHW | ||
| IL_5TZS_008 | Isolated non-canonical cWW contact | ||
| IL_5TZS_009 | Major groove platform with extra cWW | ||
| IL_5TZS_010 | Isolated non-canonical cWW pair | ||
| IL_5TZS_011 | No text annotation | ||
| IL_5TZS_012 | Single bulged A | ||
| IL_5TZS_013 | No text annotation | ||
| IL_5TZS_014 | Single bulged U | ||
| IL_5TZS_015 | Kink-turn with non-sequential stacking | ||
| IL_5TZS_016 | No text annotation | ||
| IL_5TZS_017 | Isolated cWH basepair | ||
| IL_5TZS_018 | Isolated near basepair | ||
| IL_5TZS_019 | Single bulged U | ||
| IL_5TZS_033 | C-loop | ||
| IL_5TZS_020 | C-loop with extra cWW pair | ||
| IL_5TZS_034 | Single bulged G | ||
| IL_5TZS_021 | Single bulged A | ||
| IL_5TZS_022 | No text annotation | ||
| IL_5TZS_023 | Minor groove platform with extra cWW | ||
| IL_5TZS_031 | Minor groove platform | ||
| IL_5TZS_024 | Minor groove platform | ||
| IL_5TZS_025 | C-loop | ||
| IL_5TZS_026 | Isolated non-canonical cWW pair | ||
| IL_5TZS_028 | No text annotation | ||
| IL_5TZS_029 | Kink-turn | ||
| IL_5TZS_030 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5TZS_002 | 1/1/1161:1164, 1/1/1581:1587, 1/1/1609:1616 | No text annotation | homologous J3_8P9A_076 J3_85722.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5TZS_001 | No text annotation | ||
| J4_5TZS_001 | No text annotation | ||
| J5_5TZS_001 | No text annotation |
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