HL_5TZS_008

3D structure

PDB id

5TZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Architecture of the yeast small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

5TZS|1|1|A|416

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TZS_008 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.0006

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5TZS|1|1|C|414
5TZS|1|1|C|415
5TZS|1|1|A|416
5TZS|1|1|A|417
5TZS|1|1|G|418
5TZS|1|1|G|419

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain 3

rpS6_ES6