HL_5TZS_011

3D structure

PDB id

5TZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Architecture of the yeast small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

CGGCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TZS_011 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.1744

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5TZS|1|1|C|1177
5TZS|1|1|G|1178
5TZS|1|1|G|1179
5TZS|1|1|C|1180
5TZS|1|1|G|1462

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain m

Imp4

Chain y

Unassigned protein helices