HL_5U31_002

3D structure

PDB id

5U31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of AacC2c1-sgRNA-8mer substrate DNA ternary complex

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

UUUCCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U31_002 not in the Motif Atlas

Geometric match to HL_5U30_002

Geometric discrepancy: 0.0532

The information below is about HL_5U30_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5U31|1|B|U|43
5U31|1|B|U|44
5U31|1|B|U|45
5U31|1|B|C|46
5U31|1|B|C|47
5U31|1|B|A|48
5U31|1|B|G|49

Current chains

Chain B

sgRNA

Nearby chains

Chain A

CRISPR-associated endonuclease C2c1

Chain C

Target DNA strand