HL_5U4I_004

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUUCGAC

Length

8 nucleotides

Bulged bases

5U4I|1|A|U|138

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U4I_004 not in the Motif Atlas

Geometric match to HL_8KAL_003

Geometric discrepancy: 0.2153

The information below is about HL_8KAL_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

5U4I|1|A|G|136
5U4I|1|A|U|137
5U4I|1|A|U|138
5U4I|1|A|U|139
5U4I|1|A|C|140
5U4I|1|A|G|141
5U4I|1|A|A|142
5U4I|1|A|C|143

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L23