RNA 3D Hub //

5U4I Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5U4I_0011/A/59:68No text annotation
homologous
HL_5J7L_134
NA
HL_5U4I_0031/A/123:128No text annotation
homologous
HL_7A0S_003
HL_82710.3
HL_5U4I_0061/A/194:201No text annotation
geometric
HL_4WF9_006
HL_48677.1
HL_5U4I_0091/A/305:312T-loop with 2 stacked bulged bases
homologous
HL_5J7L_142
NA
HL_5U4I_0141/A/462:467GNRA
homologous
HL_7RQB_015
NA
HL_5U4I_0151/A/487:493GNRA
homologous
HL_5J7L_148
NA
HL_5U4I_0171/A/566:575T-loop with 2 stacked bulged bases
geometric
HL_5J7L_150
NA
HL_5U4I_0221/A/744:753No text annotation
homologous
HL_5J7L_155
NA
HL_5U4I_0231/A/779:785UNCG variation
homologous
HL_7A0S_023
HL_51020.1
HL_5U4I_0241/A/826:831No text annotation
homologous
HL_4WF9_025
HL_27530.1
HL_5U4I_0271/A/978:985No text annotation
homologous
HL_5J7L_160
NA
HL_5U4I_0311/A/1222:1227GNRA
homologous
HL_5J7L_164
NA
HL_5U4I_0321/A/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
NA
HL_5U4I_0331/A/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
NA
HL_5U4I_0351/A/1389:1398No text annotation
homologous
HL_5J7L_168
NA
HL_5U4I_0391/A/1565:1568Mini UNCG
homologous
HL_5J7L_172
NA
HL_5U4I_0401/A/1612:1619No text annotation
homologous
HL_7RQB_040
NA
HL_5U4I_0411/A/1630:1636GNRA
homologous
HL_5J7L_174
NA
HL_5U4I_0421/A/1691:1696UNCG
homologous
HL_5J7L_175
NA
HL_5U4I_0451/A/1777:1787No text annotation
homologous
HL_5J7L_178
NA
HL_5U4I_0461/A/1806:1811GNRA related
homologous
HL_5J7L_179
NA
HL_5U4I_0481/A/1910:1920No text annotation
homologous
HL_5J7L_181
NA
HL_5U4I_0491/A/1949:1957No text annotation
homologous
HL_7RQB_049
NA
HL_5U4I_0501/A/2027:2036No text annotation
homologous
HL_7RQB_050
NA
HL_5U4I_0531/A/2248:2256No text annotation
homologous
HL_7A0S_052
HL_11974.1
HL_5U4I_0541/A/2264:2276No text annotation
homologous
HL_7RQB_054
NA
HL_5U4I_0621/A/2551:2557No text annotation
homologous
HL_4WF9_058
HL_48677.1
HL_5U4I_0631/A/2594:2599GNRA
homologous
HL_5J7L_196
NA
HL_5U4I_0681/A/2819:2827No text annotation
homologous
HL_5J7L_201
NA
HL_5U4I_0721/a/12:22No text annotation
homologous
HL_5J7L_001
NA
HL_5U4I_0841/a/521:528No text annotation
geometric
HL_5AMQ_001
NA
HL_5U4I_0861/a/689:698No text annotation
homologous
HL_5J7L_015
NA
HL_5U4I_0881/a/786:796No text annotation
homologous
HL_5J7L_017
NA
HL_5U4I_0901/a/862:867GNRA
homologous
HL_5J7L_019
NA
HL_5U4I_0911/a/897:902GNRA
homologous
HL_4LFB_020
HL_34789.1
HL_5U4I_0921/a/963:972No text annotation
homologous
HL_4LFB_021
HL_97521.1
HL_5U4I_0951/a/1076:1081GNRA
homologous
HL_5J7L_023
NA
HL_5U4I_0961/a/1089:1096T-loop related
homologous
HL_4LFB_025
HL_63894.1
HL_5U4I_1031/a/1515:1520GNRA
homologous
HL_6CZR_103
NA
HL_5U4I_1041/x/12:22tRNA D-loop
homologous
HL_1QF6_001
NA
HL_5U4I_1051/x/31:39tRNA anticodon loop
homologous
HL_4TUE_034
NA

Problematic loops

#loop idProblemSequence
HL_5U4I_002No text annotation
HL_5U4I_004No text annotation
HL_5U4I_005No text annotation
HL_5U4I_007No text annotation
HL_5U4I_008No text annotation
HL_5U4I_010No text annotation
HL_5U4I_011T-loop with unstacked turn
HL_5U4I_012No text annotation
HL_5U4I_013Pseudoknot geometry
HL_5U4I_016No text annotation
HL_5U4I_018No text annotation
HL_5U4I_019GNRA
HL_5U4I_020No text annotation
HL_5U4I_113No text annotation
HL_5U4I_021GNRA wlth tandem sheared
HL_5U4I_025Mini UNCG
HL_5U4I_026No text annotation
HL_5U4I_110GNRA
HL_5U4I_028No text annotation
HL_5U4I_029GNRA wlth tandem sheared
HL_5U4I_111No text annotation
HL_5U4I_030No text annotation
HL_5U4I_034GNRA
HL_5U4I_036Mini UNCG with extended bulge
HL_5U4I_037Pseudoknot geometry with 3' bulge
HL_5U4I_038UNCG
HL_5U4I_043No text annotation
HL_5U4I_044No text annotation
HL_5U4I_047GNRA variation
HL_5U4I_051No text annotation
HL_5U4I_052No text annotation
HL_5U4I_055No text annotation
HL_5U4I_056Pseudoknot geometry
HL_5U4I_057GNRA
HL_5U4I_058GNRA
HL_5U4I_059No text annotation
HL_5U4I_060No text annotation
HL_5U4I_061GNRA variation
HL_5U4I_064GNRA
HL_5U4I_065Ribsomal LSU H95
HL_5U4I_066No text annotation
HL_5U4I_067UNCG variation
HL_5U4I_069GNRA
HL_5U4I_070No text annotation
HL_5U4I_071Mini UNCG
HL_5U4I_073No text annotation
HL_5U4I_074GNRA
HL_5U4I_075GNRA
HL_5U4I_076No text annotation
HL_5U4I_112tRNA D-loop
HL_5U4I_077GNRA related
HL_5U4I_078GNRA
HL_5U4I_079No text annotation
HL_5U4I_080UNCG
HL_5U4I_081GNRA
HL_5U4I_082UNCG
HL_5U4I_083GNRA wlth extra near cWW
HL_5U4I_085No text annotation
HL_5U4I_087GNRA
HL_5U4I_089No text annotation
HL_5U4I_093GNRA
HL_5U4I_094No text annotation
HL_5U4I_097No text annotation
HL_5U4I_098GNRA
HL_5U4I_099GNRA
HL_5U4I_100T-loop with 3 stacked bulged bases
HL_5U4I_101No text annotation
HL_5U4I_102UNCG
HL_5U4I_106T-loop with 2 stacked bulged bases
HL_5U4I_107No text annotation
HL_5U4I_108tRNA anticodon loop
HL_5U4I_109T-loop with 2 stacked bulged bases

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5U4I_0011/A/24:30,
1/A/510:516		Triple sheared with non-canonical cWW
homologous
IL_5J7L_245
NA
IL_5U4I_0021/A/36:37,
1/A/442:444		Single bulged A
homologous
IL_7RQB_002
NA
IL_5U4I_0081/A/188:194,
1/A/201:208		8x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_006
NA
IL_5U4I_0131/A/481:484,
1/A/496:509		No text annotation
homologous
IL_5J7L_255
NA
IL_5U4I_0151/A/564:566,
1/A/575:577		Isolated non-canonical cWW pair
homologous
IL_5J7L_257
NA
IL_5U4I_0171/A/672:674,
1/A/806:808		Isolated non-canonical cWW pair
homologous
IL_7A0S_014
IL_01003.1
IL_5U4I_0181/A/674:678,
1/A/799:806		tHW-tHW cross-strand stack
geometric
IL_7RQB_018
NA
IL_5U4I_0191/A/697:698,
1/A/763:765		Single bulged A
homologous
IL_5J7L_261
NA
IL_5U4I_0201/A/702:703,
1/A/728:730		Single bulged G
homologous
IL_5J7L_262
NA
IL_5U4I_0211/A/703:707,
1/A/724:728		Triple sheared
geometric
IL_4WF9_024
IL_15190.1
IL_5U4I_0221/A/738:740,
1/A/757:758		Major groove platform
homologous
IL_4WF9_026
IL_48076.7
IL_5U4I_0231/A/775:777,
1/A/787:791		Multiple bulged bases
homologous
IL_5J7L_265
NA
IL_5U4I_0341/A/998:1002,
1/A/1153:1157		UAA/GAN
homologous
IL_5J7L_277
NA
IL_5U4I_1841/A/1196:1198,
1/A/1247:1250		No text annotation
homologous
IL_9DFE_044
IL_42997.4
IL_5U4I_0441/A/1197:1198,
1/A/1247:1249		No text annotation
IL_5U4I_0451/A/1202:1206,
1/A/1240:1243		No text annotation
homologous
IL_5J7L_287
NA
IL_5U4I_0471/A/1262:1269,
1/A/2011:2017		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
NA
IL_5U4I_0481/A/1310:1313,
1/A/1603:1604		Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA
IL_5U4I_0491/A/1319:1323,
1/A/1331:1333		C-loop
homologous
IL_5J7L_291
NA
IL_5U4I_0501/A/1351:1355,
1/A/1376:1380		UAA/GAN
homologous
IL_5J7L_292
NA
IL_5U4I_0631/A/1651:1656,
1/A/2004:2006		No text annotation
homologous
IL_7RQB_064
NA
IL_5U4I_0641/A/1663:1665,
1/A/1995:1997		Isolated tWW turn
homologous
IL_4WF9_063
IL_10432.1
IL_5U4I_0651/A/1666:1669,
1/A/1993:1994		Major groove platform; stack outside cWW
geometric
IL_7RQB_066
NA
IL_5U4I_1861/A/1666:1674,
1/A/1990:1994		No text annotation
homologous
IL_5J7L_386
NA
IL_5U4I_0661/A/1669:1674,
1/A/1990:1993		Intercalated tWH
homologous
IL_5J7L_307
NA
IL_5U4I_0671/A/1686:1691,
1/A/1696:1702		tSH-tSH-tHH-tHS
geometric
IL_7RQB_068
NA
IL_5U4I_0701/A/1770:1771,
1/A/1980:1982		Single bulged A
homologous
IL_7A0S_064
IL_14190.1
IL_5U4I_0711/A/1798:1804,
1/A/1813:1821		Kink-turn related
homologous
IL_5J7L_313
NA
IL_5U4I_0721/A/1837:1840,
1/A/1902:1903		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
NA
IL_5U4I_0731/A/1841:1842,
1/A/1898:1901		Major groove intercalation
homologous
IL_5J7L_315
NA
IL_5U4I_0741/A/1846:1849,
1/A/1893:1894		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_316
NA
IL_5U4I_0761/A/1933:1934,
1/A/1964:1967		Bulged stacked bases
geometric
IL_7RQB_076
NA
IL_5U4I_0771/A/1934:1945,
1/A/1961:1964		No text annotation
homologous
IL_5J7L_319
NA
IL_5U4I_0781/A/2050:2052,
1/A/2617:2618		Major groove platform
homologous
IL_5J7L_320
NA
IL_5U4I_0791/A/2054:2056,
1/A/2612:2615		No text annotation
homologous
IL_5J7L_321
NA
IL_5U4I_0811/A/2067:2070,
1/A/2441:2443		Isolated non-canonical cWW pair
geometric
IL_5H1K_001
NA
IL_5U4I_0821/A/2070:2071,
1/A/2438:2441		Minor groove platform
geometric
IL_5J7L_324
NA
IL_5U4I_0831/A/2081:2083,
1/A/2236:2239		Isolated tHS basepair with bulges
homologous
IL_5J7L_325
NA
IL_5U4I_1901/A/2454:2455,
1/A/2496:2498		Major groove platform
homologous
IL_9DFE_092
IL_48076.7
IL_5U4I_1911/A/2457:2459,
1/A/2493:2494		Major groove platform
homologous
IL_5J7L_393
NA
IL_5U4I_0951/A/2459:2461,
1/A/2489:2493		Major groove minor groove platform with extra cWW
homologous
IL_5J7L_337
NA
IL_5U4I_1921/A/2507:2508,
1/A/2580:2582		Major groove platform
homologous
IL_5J7L_394
NA
IL_5U4I_0981/A/2510:2512,
1/A/2574:2578		Isolated non-canonical cWW with bulges
geometric
IL_5J7L_340
NA
IL_5U4I_0991/A/2512:2513,
1/A/2571:2574		No text annotation
homologous
IL_5J7L_341
NA
IL_5U4I_1021/A/2591:2592,
1/A/2601:2603		Single bulged A
homologous
IL_7RQB_101
NA
IL_5U4I_1061/A/2687:2691,
1/A/2718:2722		UAA/GAN related, with intercalation
homologous
IL_5J7L_348
NA
IL_5U4I_1071/A/2695:2696,
1/A/2711:2714		Multiple bulged bases
homologous
IL_5J7L_349
NA
IL_5U4I_1401/a/504:511,
1/a/540:541		SSU/LSU pseudoknot
homologous
IL_5J7L_024
NA
IL_5U4I_1411/a/514:521,
1/a/528:537		No text annotation
IL_5U4I_1421/a/569:575,
1/a/880:881		No text annotation
homologous
IL_5J7L_026
NA
IL_5U4I_1501/a/673:678,
1/a/712:717		No text annotation
geometric
IL_4LFB_030
NA
IL_5U4I_1521/a/774:778,
1/a/804:805		Left turn
homologous
IL_4LFB_032
IL_29346.3
IL_5U4I_1531/a/779:783,
1/a/799:803		tSH-tHW-tHS
homologous
IL_5J7L_037
NA
IL_5U4I_1541/a/887:894,
1/a/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
NA
IL_5U4I_1551/a/922:923,
1/a/1393:1395		Single bulged A
homologous
IL_4LFB_035
IL_14190.1
IL_5U4I_1561/a/925:927,
1/a/1390:1391		Single bulged G
homologous
IL_5J7L_040
NA
IL_5U4I_1641/a/1052:1056,
1/a/1204:1206		Isolated cWS basepair
homologous
IL_4LFB_044
IL_82453.1
IL_5U4I_1651/a/1057:1058,
1/a/1199:1203		Minor groove platform
homologous
IL_5J7L_048
NA
IL_5U4I_1661/a/1060:1061,
1/a/1195:1197		Single bulged A
geometric
IL_5J7L_049
NA
IL_5U4I_1671/a/1061:1063,
1/a/1193:1195		Isolated non-canonical cWW pair
homologous
IL_5J7L_050
NA
IL_5U4I_1741/a/1303:1308,
1/a/1329:1334		No text annotation
homologous
IL_5J7L_057
NA
IL_5U4I_1751/a/1399:1401,
1/a/1501:1504		No text annotation
homologous
IL_5J7L_058
NA
IL_5U4I_1761/a/1401:1404,
1/a/1497:1501		No text annotation
geometric
IL_4V88_464
NA
IL_5U4I_2001/a/1405:1407,
1/a/1494:1496		Isolated non-canonical cWW pair
homologous
IL_5J7L_363
NA
IL_5U4I_2011/a/1407:1409,
1/a/1491:1494		Decoding loop related
geometric
IL_2O3X_003
IL_61702.1
IL_5U4I_1781/a/1412:1414,
1/a/1486:1488		Isolated non-canonical cWW pair
homologous
IL_5J7L_061
NA
IL_5U4I_1791/a/1416:1419,
1/a/1481:1484		Double sheared
homologous
IL_5J7L_062
NA

Problematic loops

#loop idProblemSequence
IL_5U4I_003Minor groove platform
IL_5U4I_004No text annotation
IL_5U4I_005Single stack bend
IL_5U4I_006Single stack bend
IL_5U4I_007Single stack bend
IL_5U4I_0097x6 Sarcin-Ricin; G-bulge
IL_5U4I_010No text annotation
IL_5U4I_011No text annotation
IL_5U4I_012No text annotation
IL_5U4I_014Double sheared
IL_5U4I_016AAA cross-strand stack
IL_5U4I_02490 degree turn
IL_5U4I_183No text annotation
IL_5U4I_025Stack outside cWW
IL_5U4I_026Single stack bend
IL_5U4I_0277x7 Sarcin-Ricin with intercalated A; G-bulge
IL_5U4I_028Single bulged G
IL_5U4I_029C-loop
IL_5U4I_030Tandem non-canonical cWW pairs
IL_5U4I_031Double sheared with non-canonical cWW
IL_5U4I_032Single bulged A
IL_5U4I_033Single bulged C
IL_5U4I_035SSU/LSU pseudoknot
IL_5U4I_036Single bulged U
IL_5U4I_037Kink-turn related
IL_5U4I_038No text annotation
IL_5U4I_039Isolated non-canonical cWW pair
IL_5U4I_040Tandem non-canonical cWW pairs
IL_5U4I_041Kink-turn
IL_5U4I_042No text annotation
IL_5U4I_043No text annotation
IL_5U4I_046Kink-turn
IL_5U4I_051tSH-tHW-tHS
IL_5U4I_052Single stack bend
IL_5U4I_053No text annotation
IL_5U4I_054UAA/GAN
IL_5U4I_055Tandem non-canonical cWW pairs
IL_5U4I_056tSH-tHW
IL_5U4I_057Single bulged U
IL_5U4I_202No text annotation
IL_5U4I_058No text annotation
IL_5U4I_059tSH-tHW-tHS
IL_5U4I_060180 degree turn
IL_5U4I_061Single bulged A
IL_5U4I_062UAA/GAN variation
IL_5U4I_185Triple sheared related
IL_5U4I_2036x5 Sarcin-Ricin; G-bulge
IL_5U4I_068No text annotation
IL_5U4I_069No text annotation
IL_5U4I_187No text annotation
IL_5U4I_075No text annotation
IL_5U4I_080No text annotation
IL_5U4I_084Isolated non-canonical cWW pair
IL_5U4I_085Isolated non-canonical cWW pair
IL_5U4I_086No text annotation
IL_5U4I_204Isolated non-canonical cWW pair
IL_5U4I_087Isolated non-canonical cWW pair
IL_5U4I_188No text annotation
IL_5U4I_205No text annotation
IL_5U4I_088No text annotation
IL_5U4I_089Kink-turn
IL_5U4I_090Tandem non-canonical cWW pairs
IL_5U4I_206Single bulged U
IL_5U4I_189Isolated non-canonical cWW pair
IL_5U4I_091Double sheared
IL_5U4I_092No text annotation
IL_5U4I_093No text annotation
IL_5U4I_094Major groove platform with extra pair
IL_5U4I_096Double sheared with non-canonical cWW
IL_5U4I_097No text annotation
IL_5U4I_100Major groove platform with intercalation
IL_5U4I_101No text annotation
IL_5U4I_103tSH-tHS-tHW
IL_5U4I_1047x6 Sarcin-Ricin; G-bulge
IL_5U4I_105C-loop
IL_5U4I_108UAA/GAN with extra cWW
IL_5U4I_109No text annotation
IL_5U4I_110Isolated non-canonical cWW pair
IL_5U4I_111Multiple bulged bases with non-canonical cWW
IL_5U4I_112No text annotation
IL_5U4I_207No text annotation
IL_5U4I_113Major groove intercalation
IL_5U4I_114No text annotation
IL_5U4I_115Major groove minor groove platform; mini C-loop
IL_5U4I_116Symmetric double minor groove platform
IL_5U4I_117Bacterial 5S Loop E
IL_5U4I_193Single bulged G
IL_5U4I_118Isolated non-canonical cWW pair
IL_5U4I_119Single bulged A
IL_5U4I_120No text annotation
IL_5U4I_121Minor groove platform
IL_5U4I_122Multiple bulged bases
IL_5U4I_123Minor groove platform with extra cWW
IL_5U4I_124Minor groove platform
IL_5U4I_208Isolated non-canonical cWW pair
IL_5U4I_125Tandem non-canonical cWW pairs
IL_5U4I_126Isolated non-canonical cWW pair
IL_5U4I_127Minor groove platform related
IL_5U4I_194No text annotation
IL_5U4I_128Isolated cWH basepair
IL_5U4I_129tWH-tWH-tHW-tHW
IL_5U4I_130Kink-turn with non-sequential stacking
IL_5U4I_131No text annotation
IL_5U4I_132No text annotation
IL_5U4I_209C-loop
IL_5U4I_133Single bulged U
IL_5U4I_134No text annotation
IL_5U4I_210C-loop
IL_5U4I_135Single bulged G
IL_5U4I_136No text annotation
IL_5U4I_195No text annotation
IL_5U4I_137No text annotation
IL_5U4I_138tSH-tHW-tWW
IL_5U4I_139No text annotation
IL_5U4I_143tSH-tHW-tHS
IL_5U4I_196No text annotation
IL_5U4I_197No text annotation
IL_5U4I_144Major groove platform
IL_5U4I_145Major groove minor groove platform; mini C-loop
IL_5U4I_146tSH-tHW-tHH-tHS
IL_5U4I_211No text annotation
IL_5U4I_198No text annotation
IL_5U4I_147Major groove platform; stack outside cWW
IL_5U4I_148Single stack bend
IL_5U4I_149Tandem non-canonical cWW pairs
IL_5U4I_151Kink-turn
IL_5U4I_157Minor groove platform
IL_5U4I_158No text annotation
IL_5U4I_159Minor groove platform
IL_5U4I_199Single stack bend
IL_5U4I_160No text annotation
IL_5U4I_161Single stack bend
IL_5U4I_162Single bulged U
IL_5U4I_163Stack and bulge
IL_5U4I_168No text annotation
IL_5U4I_169Minor groove platform
IL_5U4I_170No text annotation
IL_5U4I_171No text annotation
IL_5U4I_172180 degree turn
IL_5U4I_173Double sheared with non-canonical cWW
IL_5U4I_177Partly complementary
IL_5U4I_180Triple sheared related
IL_5U4I_181Single bulged A
IL_5U4I_182No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5U4I_0011/A/30:31,
1/A/474:481,
1/A/509:510		No text annotation
homologous
J3_7RQB_001
NA
J3_5U4I_0281/A/32:35,
1/A/445:461,
1/A/468:473		No text annotation
homologous
J3_5J7L_067
NA
J3_5U4I_0031/A/683:689,
1/A/773:775,
1/A/791:794		No text annotation
homologous
J3_5J7L_038
NA
J3_5U4I_0041/A/698:700,
1/A/732:736,
1/A/760:763		No text annotation
homologous
J3_7RQB_005
NA
J3_5U4I_0061/A/1298:1303,
1/A/1625:1627,
1/A/1639:1642		No text annotation
homologous
J3_5J7L_041
NA
J3_5U4I_0071/A/1306:1309,
1/A/1605:1611,
1/A/1620:1622		No text annotation
homologous
J3_7A0S_007
J3_47341.1
J3_5U4I_0361/A/1344:1349,
1/A/1382:1385,
1/A/1402:1403		No text annotation
homologous
J3_5J7L_043
NA
J3_5U4I_0301/A/1424:1429,
1/A/1564:1565,
1/A/1568:1574		No text annotation
homologous
J3_5J7L_069
NA
J3_5U4I_0101/A/2282:2284,
1/A/2384:2395,
1/A/2421:2427		No text annotation
homologous
J3_5J7L_070
NA
J3_5U4I_0191/a/826:829,
1/a/857:861,
1/a/868:874		No text annotation
homologous
J3_5J7L_004
NA
J3_5U4I_0201/a/936:939,
1/a/1344:1350,
1/a/1372:1379		No text annotation
homologous
J3_4LFB_002
J3_85722.1
J3_5U4I_0221/a/955:962,
1/a/973:984,
1/a/1221:1225		No text annotation
homologous
J3_5J7L_006
NA
J3_5U4I_0241/a/1063:1068,
1/a/1107:1113,
1/a/1187:1193		No text annotation
homologous
J3_5J7L_008
NA
J4_5U4I_0041/A/1270:1276,
1/A/1294:1295,
1/A/1645:1648,
1/A/2009:2010		No text annotation
homologous
J4_5J7L_021
NA
J4_5U4I_0171/A/1310:1314,
1/A/1338:1343,
1/A/1404:1405,
1/A/1597:1604		No text annotation
homologous
J4_5J7L_022
NA
J4_5U4I_0181/A/1313:1314,
1/A/1338:1343,
1/A/1404:1405,
1/A/1597:1603		No text annotation
homologous
J4_5J7L_023
NA
J4_5U4I_0081/A/1772:1776,
1/A/1788:1792,
1/A/1827:1830,
1/A/1975:1979		No text annotation
homologous
J4_9DFE_007
J4_61477.6
J4_5U4I_0091/A/1833:1835,
1/A/1905:1906,
1/A/1924:1933,
1/A/1967:1972		No text annotation
homologous
J4_9DFE_008
J4_42306.1
J4_5U4I_0101/A/2285:2289,
1/A/2343:2347,
1/A/2370:2372,
1/A/2381:2383		No text annotation
homologous
J4_9DFE_009
J4_98139.1
J4_5U4I_0141/a/575:577,
1/a/764:769,
1/a/810:821,
1/a/879:880		No text annotation
homologous
J4_5J7L_003
NA
J4_5U4I_0151/x/6:9,
1/x/25:27,
1/x/43:49,
1/x/65:66		tRNA junction
homologous
J4_4WT8_034
NA
J5_5U4I_0021/A/531:533,
1/A/560:564,
1/A/577:579,
1/A/1261:1262,
1/A/2017:2018		No text annotation
homologous
J5_5J7L_014
NA
J5_5U4I_0031/A/584:589,
1/A/668:671,
1/A/809:812,
1/A/1195:1196,
1/A/1250:1256		No text annotation
homologous
J5_5J7L_015
NA
J5_5U4I_0091/A/1674:1682,
1/A/1706:1707,
1/A/1751:1752,
1/A/1756:1764,
1/A/1988:1990		No text annotation
homologous
J5_5J7L_016
NA
J5_5U4I_0051/A/2057:2064,
1/A/2446:2454,
1/A/2498:2507,
1/A/2582:2588,
1/A/2606:2611		No text annotation
J5_5U4I_0061/A/2074:2077,
1/A/2243:2246,
1/A/2258:2259,
1/A/2281:2282,
1/A/2427:2435		No text annotation
J6_5U4I_0021/A/2074:2077,
1/A/2243:2246,
1/A/2258:2259,
1/A/2281:2284,
1/A/2384:2395,
1/A/2421:2435		No text annotation
J7_5U4I_0011/A/8:15,
1/A/525:531,
1/A/2018:2023,
1/A/2040:2043,
1/A/2625:2630,
1/A/2788:2789,
1/A/2894:2895		No text annotation
J7_5U4I_0021/A/817:822,
1/A/835:838,
1/A/940:946,
1/A/971:976,
1/A/987:991,
1/A/1163:1164,
1/A/1185:1190		No text annotation

Problematic loops

#loop idProblemSequence
J3_5U4I_002No text annotation
J3_5U4I_029No text annotation
J3_5U4I_005No text annotation
J3_5U4I_008No text annotation
J3_5U4I_009Kink-turn 3-way junction
J3_5U4I_011No text annotation
J3_5U4I_012No text annotation
J3_5U4I_013No text annotation
J3_5U4I_014No text annotation
J3_5U4I_015No text annotation
J3_5U4I_016No text annotation
J3_5U4I_031No text annotation
J3_5U4I_017No text annotation
J3_5U4I_032No text annotation
J3_5U4I_018No text annotation
J3_5U4I_021No text annotation
J3_5U4I_023No text annotation
J3_5U4I_033No text annotation
J3_5U4I_037No text annotation
J3_5U4I_034No text annotation
J3_5U4I_025No text annotation
J3_5U4I_026No text annotation
J3_5U4I_035No text annotation
J3_5U4I_027No text annotation
J4_5U4I_001No text annotation
J4_5U4I_002No text annotation
J4_5U4I_003No text annotation
J4_5U4I_005No text annotation
J4_5U4I_006No text annotation
J4_5U4I_007No text annotation
J4_5U4I_011No text annotation
J4_5U4I_012No text annotation
J4_5U4I_013No text annotation
J4_5U4I_016tRNA junction
J5_5U4I_001No text annotation
J5_5U4I_004No text annotation
J5_5U4I_007No text annotation
J5_5U4I_008No text annotation
J6_5U4I_001No text annotation

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