HL_5U4I_009

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

5U4I|1|A|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U4I_009 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.1477

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

5U4I|1|A|C|305
5U4I|1|A|U|306
5U4I|1|A|G|307
5U4I|1|A|G|308
5U4I|1|A|A|309
5U4I|1|A|A|310
5U4I|1|A|A|311
5U4I|1|A|G|312

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L24