HL_5U4I_013

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

5U4I|1|A|G|411

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U4I_013 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.1196

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5U4I|1|A|G|410
5U4I|1|A|G|411
5U4I|1|A|A|412
5U4I|1|A|C|413
5U4I|1|A|C|414
5U4I|1|A|A|415
5U4I|1|A|U|416
5U4I|1|A|C|417

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L15