HL_5U4I_025

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAACCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U4I_025 not in the Motif Atlas

Geometric match to HL_4LFB_005

Geometric discrepancy: 0.336

The information below is about HL_4LFB_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

5U4I|1|A|C|885
5U4I|1|A|A|886
5U4I|1|A|A|887
5U4I|1|A|C|888
5U4I|1|A|C|889
5U4I|1|A|C|890
5U4I|1|A|G|891

Current chains

Chain A

23S rRNA

Nearby chains

Chain m

30S ribosomal protein S13

Chain s

30S ribosomal protein S19