HL_5U4I_053
3D structure
- PDB id
- 5U4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUG(OMG)GGCGG
- Length
- 9 nucleotides
- Bulged bases
- 5U4I|1|A|G|2250
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5U4I_053 not in the Motif Atlas
- Homologous match to HL_7A0S_052
- Geometric discrepancy: 0.1084
- The information below is about HL_7A0S_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_85367.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
5U4I|1|A|C|2248
5U4I|1|A|U|2249
5U4I|1|A|G|2250
5U4I|1|A|OMG|2251
5U4I|1|A|G|2252
5U4I|1|A|G|2253
5U4I|1|A|C|2254
5U4I|1|A|G|2255
5U4I|1|A|G|2256
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain N
- 50S ribosomal protein L16
- Chain X
- 50S ribosomal protein L27
- Chain v
- Peptide chain release factor 2
- Chain x
- Transfer RNA; tRNA
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