HL_5U4I_064

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U4I_064 not in the Motif Atlas

Homologous match to HL_4WF9_060

Geometric discrepancy: 0.2861

The information below is about HL_4WF9_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

5U4I|1|A|C|2658
5U4I|1|A|G|2659
5U4I|1|A|A|2660
5U4I|1|A|G|2661
5U4I|1|A|A|2662
5U4I|1|A|G|2663

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L6