3D structure

PDB id
5U4I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
UGCCAA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5U4I_065 not in the Motif Atlas
Homologous match to HL_5J7L_198
Geometric discrepancy: 0.1716
The information below is about HL_5J7L_198
Detailed Annotation
Ribsomal LSU H95
Broad Annotation
Ribsomal LSU H95
Motif group
HL_65794.5
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
14

Unit IDs

5U4I|1|A|U|2701
5U4I|1|A|G|2702
5U4I|1|A|C|2703
5U4I|1|A|C|2704
5U4I|1|A|A|2705
5U4I|1|A|A|2706

Current chains

Chain A
23S rRNA

Nearby chains

Chain O
50S ribosomal protein L17

Coloring options:


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