HL_5U4I_080

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

5U4I|1|a|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U4I_080 not in the Motif Atlas

Homologous match to HL_5J7L_009

Geometric discrepancy: 0.2524

The information below is about HL_5J7L_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5U4I|1|a|C|342
5U4I|1|a|U|343
5U4I|1|a|A|344
5U4I|1|a|C|345
5U4I|1|a|G|346
5U4I|1|a|G|347

Current chains

Chain a

16S rRNA

Nearby chains

Chain L

50S ribosomal protein L14

Chain Q

50S ribosomal protein L19