HL_5U4I_083

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

5U4I|1|a|U|467

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U4I_083 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2648

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5U4I|1|a|G|462
5U4I|1|a|U|463
5U4I|1|a|U|464
5U4I|1|a|A|465
5U4I|1|a|A|466
5U4I|1|a|U|467
5U4I|1|a|A|468
5U4I|1|a|C|469
5U4I|1|a|C|470

Current chains

Chain a

16S rRNA

Nearby chains