HL_5U4I_089

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCCUUGAGG

Length

9 nucleotides

Bulged bases

5U4I|1|a|U|842, 5U4I|1|a|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U4I_089 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1719

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

5U4I|1|a|C|839
5U4I|1|a|C|840
5U4I|1|a|C|841
5U4I|1|a|U|842
5U4I|1|a|U|843
5U4I|1|a|G|844
5U4I|1|a|A|845
5U4I|1|a|G|846
5U4I|1|a|G|847

Current chains

Chain a

16S rRNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain r

30S ribosomal protein S18