HL_5U9F_009

3D structure

PDB id

5U9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

5U9F|1|01|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U9F_009 not in the Motif Atlas

Homologous match to HL_4WF9_010

Geometric discrepancy: 0.1461

The information below is about HL_4WF9_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

5U9F|1|01|C|305
5U9F|1|01|U|306
5U9F|1|01|G|307
5U9F|1|01|G|308
5U9F|1|01|A|309
5U9F|1|01|A|310
5U9F|1|01|A|311
5U9F|1|01|G|312

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L24