HL_5U9F_014

3D structure

PDB id

5U9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

5U9F|1|01|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U9F_014 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.1598

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

5U9F|1|01|C|487
5U9F|1|01|G|488
5U9F|1|01|G|489
5U9F|1|01|C|490
5U9F|1|01|G|491
5U9F|1|01|A|492
5U9F|1|01|G|493

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L22