HL_5U9F_021

3D structure

PDB id

5U9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUUGAAAAA

Length

10 nucleotides

Bulged bases

5U9F|1|01|U|747, 5U9F|1|01|A|751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U9F_021 not in the Motif Atlas

Homologous match to HL_7A0S_022

Geometric discrepancy: 0.1698

The information below is about HL_7A0S_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

5U9F|1|01|U|744
5U9F|1|01|G|745
5U9F|1|01|U|746
5U9F|1|01|U|747
5U9F|1|01|G|748
5U9F|1|01|A|749
5U9F|1|01|A|750
5U9F|1|01|A|751
5U9F|1|01|A|752
5U9F|1|01|A|753

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 05

50S ribosomal protein L3

Chain 21

50S ribosomal protein L22

Chain 30

50S ribosomal protein L32

Chain 32

50S ribosomal protein L34