3D structure

PDB id
5U9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GUGCUAACGU
Length
10 nucleotides
Bulged bases
5U9F|1|01|U|958, 5U9F|1|01|C|961
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5U9F_025 not in the Motif Atlas
Geometric match to HL_5UD5_002
Geometric discrepancy: 0.265
The information below is about HL_5UD5_002
Detailed Annotation
tRNA anticodon loop
Broad Annotation
Anticodon loop
Motif group
HL_77082.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
8

Unit IDs

5U9F|1|01|G|954
5U9F|1|01|U|955
5U9F|1|01|G|956
5U9F|1|01|C|957
5U9F|1|01|U|958
5U9F|1|01|A|959
5U9F|1|01|A|960
5U9F|1|01|C|961
5U9F|1|01|G|962
5U9F|1|01|U|963

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 02
5S ribosomal RNA; 5S rRNA
Chain 15
50S ribosomal protein L16

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4266 s