HL_5U9F_025
3D structure
- PDB id
- 5U9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGCUAACGU
- Length
- 10 nucleotides
- Bulged bases
- 5U9F|1|01|U|958, 5U9F|1|01|C|961
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5U9F_025 not in the Motif Atlas
- Geometric match to HL_5UD5_002
- Geometric discrepancy: 0.265
- The information below is about HL_5UD5_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_77082.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
5U9F|1|01|G|954
5U9F|1|01|U|955
5U9F|1|01|G|956
5U9F|1|01|C|957
5U9F|1|01|U|958
5U9F|1|01|A|959
5U9F|1|01|A|960
5U9F|1|01|C|961
5U9F|1|01|G|962
5U9F|1|01|U|963
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 02
- 5S ribosomal RNA; 5S rRNA
- Chain 15
- 50S ribosomal protein L16
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