3D structure

PDB id
5U9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UUUAUUAAAAA
Length
11 nucleotides
Bulged bases
5U9F|1|01|A|1780, 5U9F|1|01|U|1781, 5U9F|1|01|U|1782, 5U9F|1|01|A|1786
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5U9F_044 not in the Motif Atlas
Homologous match to HL_5J7L_178
Geometric discrepancy: 0.1491
The information below is about HL_5J7L_178
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_01962.2
Basepair signature
cWW-tWH-tWH-F
Number of instances in this motif group
6

Unit IDs

5U9F|1|01|U|1777
5U9F|1|01|U|1778
5U9F|1|01|U|1779
5U9F|1|01|A|1780
5U9F|1|01|U|1781
5U9F|1|01|U|1782
5U9F|1|01|A|1783
5U9F|1|01|A|1784
5U9F|1|01|A|1785
5U9F|1|01|A|1786
5U9F|1|01|A|1787

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 04
50S ribosomal protein L2
Chain 32
50S ribosomal protein L34

Coloring options:


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